Detailed information on CNT30260230


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375250Brassica rapaArabidopsis thaliana22.8115.7493.8565forward
CNT30618329Brassica rapaSesamum indicum24.215.685.5169forward
CNT30543529Brassica rapaBrassica napus62.4618.799.44178forward
CNT30239005Brassica rapaBrassica oleracea70.5320.1293.03201forward
CNT30310223Brassica rapaCamelina sativa21.759.4787.162forward
CNT3075983Brassica rapaBrassica juncea4016.2685.09114forward
CNT30612709Brassica rapaArabis alpina21.45.7390.1661forward
CNT3050792Brassica rapaCucumis sativus25.967.4185.1474forward
CNT30114821Brassica rapaEutrema salsugineum51.2313.9786.3146forward

Expression of CNT30260230

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MHNSHSSKKPSRKITTPTTNPNTNIHQRTRIHLKRRSNGHIEIQLRCEIKTNHITTVIFSSAESSTSEDVSSDDETNGDGCDSS

>peptide 2 (43 aa)
KKSRRKYNVEACIIHIRLKSLQGKLQLQQQTQIQTYINGQGFI*

Sequence

>CNT30260230
AAGAAATCAAGAAGAAAATATAACGTAGAAGCATGCATAATTCACATTCGTCTAAAAAGCCTTCAAGGAAAATTACAACTCCAACAACAAACCCAAATAC
AAACATACATCAACGGACAAGGATTCATCTAAAAAGAAGATCCAACGGCCACATAGAAATTCAATTACGATGCGAAATAAAAACAAATCATATTACAACA
GTAATTTTCAGCTCCGCTGAAAGCTCCACCAGCGAGGATGTTAGCTCCGACGATGAAACCAATGGCGATGGGTGCGATAGTTCCG