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Detailed information on CNT30334322


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 5e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618329Cynara cardunculusSesamum indicum36.6413.7981.76170forward
CNT30509931Cynara cardunculusSolanum lycopersicum40.39.7479.68187forward
CNT3066802Cynara cardunculusLeersia perrieri18.5336.2984.8886forward
CNT30570838Cynara cardunculusVitis vinifera33.4136.8280.65155forward
CNT30114821Cynara cardunculusEutrema salsugineum23.7110.5382.73110forward

Expression of CNT30334322

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHHQLKCWLPPLNQSPMVRLYRYRPFSGQ*

>peptide 2 (81 aa)
KATAGFIDAPVNAPPAKMLAATTKPIANGAIVPISPFFGSIAVAYTVYTRPKVITISNTKALHTDSPAANEKPVVACIFKE*

Sequence

>CNT30334322
CGAAGGCAACGGCTGGGTTCATTGATGCACCGGTGAATGCACCACCAGCTAAAATGTTGGCTGCCACCACTAAACCAATCGCCAATGGTGCGATTGTACC
GATATCGCCCTTTTTCGGGTCAATAGCGGTGGCGTACACTGTGTACACGAGGCCAAAAGTCATCACGATCTCGAACACGAAGGCGCTCCATACCGATAGT
CCGGCGGCCAACGAGAAGCCGGTTGTTGCCTGTATTTTCAAAGAATAAAAAAATATTTCTCAGCTAATTTTGTAAGATCACGCCTTCTCCAACATATGTT
CCATCAGTCAGTGGCTTAGGCTAGTGGTGGGTCCCGAATCGAATAAGAACTCATTTTGTATTTGGACAAAGTCATTTCACCCCTTTACGAATTGATTTAC
AATATTGTGTAACAAATAAAATGTGTTATTTATCGTTTTAAAATTTTAACCCTAATTTTGTTTG