CANTATAdb - search

Detailed information on CNT30612709

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375250	Arabis alpina	Arabidopsis thaliana	11.75	30.27	92	125	forward
CNT30543529	Arabis alpina	Brassica napus	35.43	39.6	82.23	377	forward
CNT3075983	Arabis alpina	Brassica juncea	18.23	27.67	85.57	194	forward
CNT30260230	Arabis alpina	Brassica rapa	5.73	21.4	90.16	61	forward
CNT30229501	Arabis alpina	Ananas comosus	11.47	20.54	82.79	122	forward
CNT3066802	Arabis alpina	Leersia perrieri	12.59	56.54	82.84	134	forward
CNT30623609	Arabis alpina	Daucus carota	12.03	22.78	82.03	128	forward
CNT30619934	Arabis alpina	Cajanus cajan	12.59	26.07	80.6	134	forward
CNT30644098	Arabis alpina	Cannabis sativa	10.53	40	82.14	112	forward
CNT3057357	Arabis alpina	Amborella trichopoda	12.31	20.76	82.44	131	forward
CNT30114821	Arabis alpina	Eutrema salsugineum	27.63	28.13	85.03	294	forward

Expression of CNT30612709

Peptides detected in this lncRNA

>peptide 1 (47 aa)
QIHINQQLQSPHRNPITMRNKNQIKSQHFEFTVFSNQWWAIARGHFQ*

>peptide 2 (29 aa)
MSFTILLTPNKLKLDKSSSSRSVLMSNTK*

Sequence

>CNT30612709
CCCAAATACACATAAATCAACAACTACAAAGTCCACATAGAAATCCAATTACGATGCGAAATAAAAATCAAATCAAATCACAACATTTTGAATTCACCGT
TTTCAGTAATCAGTGGTGGGCAATTGCTCGTGGCCATTTTCAATGATGAACACAAAGTCGTAGATAAGTCCAGCGAGTCCACCTCCAACAAGAGGACCAG
CCCAGTAAACCCAGTGGTTGGTCCACCGGCTAGGATGTTAGCTCCAACGATGAAACCAATAGCGATTGGTGCGATGGTTCCGAGACTGCCGTTTTTCGGG
TCGATGGCTGTTGCGTAGACGGTGTAGACGAGTCCGAATGTCATTACGATCTCTAAGACTAAAGCGTTTAAGGATCCGACTCCAGCGCCGAGACCGAAAG
CTGGAACAGGCTGGAAAAAAATAACATTTTGGGTTAGTTACTTGCCGGATAAGTTAGGTCAAAAGTGCGATTTTAGAAGGAATATTCATTATGGATAAGG
TTAAAGACCAAACCCAACACACTTGGTCCAAATTAAGTTTAAACTTTTTTTTTTGTCAGAATTAAGTTTTAATTAGTTTGATTATTATTATTTTGTTTGT
TTGTTATCACAATAGTAATAAACTAATTTACCACTATTTATGTTAACCAAATATCAGATCCAAACAAATCCATGAAAAAGACAGAAAAACAAAATCATCA
ATATTTTAATTTTCTTTGGGAGGATTAAAACACATGTTACTAAAAACCTAAACATGTTCATTTAAAGCCATAACCCTACCAAACATTCATGAGAAGCAAA
ATATCCTTACGAAACCGATTTGTACTAGATTTAATTTAAATGTCATTTACTATTCTTCTAACACCGAACAAACTCAAACTAGATAAATCATCATCAAGTA
GATCCGTTCTAATGAGTAACACAAAATAAAATTTGAAGTTTATTTGGTCAACATGTATTATACAGGTTTTTAGTTTGGTGACACTATTTTTTTTTTACTA
GACTACAAGTTCTAATCCAATATGTTACAAAATGATTTAGTAAGGCAATAAGTATAGGGACGTT