Detailed information on CNT30583519


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233604Echinochloa crusgalliBrassica oleracea40.6215.8382.69104forward
CNT30217954Echinochloa crusgalliKalanchoe fedtschenkoi34.7724.7284.2789forward
CNT30718929Echinochloa crusgalliMalus domestica golden45.3112.581.9116forward
CNT30368762Echinochloa crusgalliSorghum bicolor87.544.3692.41224forward
CNT30369533Echinochloa crusgalliOryza glumipatula87.1139.8983.86223forward
CNT30118654Echinochloa crusgalliCitrus clementina37.1117.6683.1695forward
CNT30575228Echinochloa crusgalliOryza barthii87.1117.683.86223forward

Expression of CNT30583519

Peptides detected in this lncRNA

>peptide 1 (83 aa)
GPTRVGPVVVGARRRDHARLEPRQRRLRRDDAQLAEDLRGDAAERAQHGEPPVDHLAVGQPLGLDEAARALRVRQAQRVETVVA

Sequence

>CNT30583519
CTGGGCCGACTCGAGTCGGCCCAGTAGTTGTAGGTGCCCGCCGGCGGGATCACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATGATGCCCA
GCTTGCCGAAGATCTCCGGGGCGATGCAGCCGAACGCGCCCAGCATGGCGAACCGCCCGTTGATCACCTCGCCGTAGGCCAGCCACTTGGGCTCGATGAA
GCCGCCCGTGCCCTCCGGGTCCGACAGGCCCAGCGGGTCGAAACCGTAGTCGCCGG