Detailed information on CNT30543414


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233657Brassica napusBrassica oleracea10053.6498.93280forward
CNT30259035Brassica napusBrassica rapa10060.48100280forward
CNT30718929Brassica napusMalus domestica golden3510.5684.6998forward

Expression of CNT30543414

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (44 aa)
IISVELENKECVRVCPVAVCPCRWNHTGLEPGKSSVCRNQTGLS*

Sequence

>CNT30543414
GATCATCTCAGTGGAACTTGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAG
AGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGTTGATGATCTCTCCG
TAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCC