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Detailed information on CNT30450549


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 7e-39

BLAST vs NONCODE:
NONBNAT002655, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387400Saccharum spontaneumTriticum turgidum57.5742.4388.73213forward
CNT30554318Saccharum spontaneumOryza glaberrima71.6238.2490.57265forward
CNT30680980Saccharum spontaneumTriticum urartu70.2749.6289.23260forward
CNT30620951Saccharum spontaneumCajanus cajan20.817.485.7177forward
CNT30596514Saccharum spontaneumOryza meridionalis70.2716.390.38260forward
CNT30116951Saccharum spontaneumOryza nivara75.951989.68281forward

Expression of CNT30450549

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVVWSGSLRWARVLDLRQLQPLLLLRVGRQAERVEVGAAGVQPLLWVELGVALELDVADHEHLDPDERRDGERQRLAQVGGPV

>peptide 2 (42 aa)
MLRTCRRWWCGAGRSGGRACLISASCSRSFFSGSAARPSGSK*

>peptide 3 (30 aa)
GSSISRLIEIIVNSRTRFDRWTGRSNGGLN*

Sequence

>CNT30450549
CGGGTTCATCCATCTCCAGGCTCATAGAGATCATAGTTAATTCAAGAACACGTTTCGATCGATGGACAGGGCGGAGCAACGGCGGGCTTAATTAAGAGGA
TGCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTCAGGTGGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTC
GGCCGCCAGGCCGAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCTCTTCTCTGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACG
AGCACCTCGATCCAGATGAGCGTCGAGATGGAGAACGGCAGCGGCTGGCCCAGGTAGGAGGACCCGTCCA