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Detailed information on CNT30543417


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Brassica napusSetaria viridis33.7749.3679.74232forward
CNT30405505Brassica napusBeta vulgaris20.5238.2184.4141forward
CNT30233367Brassica napusBrassica oleracea99.5676.7796.35684forward
CNT3082002Brassica napusBrassica juncea68.2764.3396.38469forward
CNT30259051Brassica napusBrassica rapa97.6783.9897.62671forward
CNT30217954Brassica napusKalanchoe fedtschenkoi16.8932.2281.03116forward
CNT30350309Brassica napusEragrostis tef33.7739.8680.17232forward
CNT30583045Brassica napusEchinochloa crusgalli24.7521.9981.18170forward
CNT30557458Brassica napusPanicum hallii26.0635.881.56179forward
CNT3040126Brassica napusMarchantia polymorpha39.4540.8780.07271forward

Expression of CNT30543417

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

>peptide 2 (36 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKNGPPG*

Sequence

>CNT30543417
AAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGT
TGACGGGATCCGCCAAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCT
ACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAATGGTCCACCGGGGTAAGCCGGGTCA
CCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCA
TCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAGTTGATGCAGCCTTAACAACCAAGGAAACCTT
CCTCTGTGATACGGACACAGCTGGTTTTGCGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGTAAGTGAAGAAGATACAAGCGCTTGTGCTGCCATT
TTTTTTTGCTTAAACTCTTCTCTTCTGTCACCAAGAGACGATGATTATTGAATAATGGTCTGCAGGGAACCTAGTGTTAAGAGTAGA