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Detailed information on CNT30259051


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Brassica rapaSetaria viridis29.0449.3679.74232forward
CNT30486017Brassica rapaOlea europaea41.6833.6779.58333forward
CNT30711417Brassica rapaGlycine max50.0622.3580.25400forward
CNT30543417Brassica rapaBrassica napus83.9897.6797.62671forward
CNT30233367Brassica rapaBrassica oleracea83.8575.297.16670forward
CNT3082002Brassica rapaBrassica juncea57.763.2496.75461forward
CNT30350309Brassica rapaEragrostis tef29.0439.8680.17232forward
CNT30359023Brassica rapaLactuca sativa48.5673.6280.67388forward
CNT3040126Brassica rapaMarchantia polymorpha33.9240.8780.07271forward

Expression of CNT30259051

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

>peptide 2 (34 aa)
MAIISYKRRICLHRVLQHKETDGYKRMGNQHKTP*

>peptide 3 (36 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKNGPPG*

Sequence

>CNT30259051
TATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATGGCCATTATTTCTTACAAAAGACGAATATGTTTAC
ACAGGGTGTTACAACACAAAGAAACTGATGGATACAAGAGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACT
TGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAATCCCTGCACAAAGTAGCC
TAGGATGGCGAGCATTGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAAT
GGTCCACCGGGGTAAGCCGGGTCACCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCA
ACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAGTTGATGC
AGCCTTAACAACCAAGGAAACCTTCCTCTGTGATACGGACACAGCTGGTTTTACGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGTAAATGAAGAA
GATACAAGCGCTTGTGCTGCCATTTTTTTTGCTTAAACTCTTTTCTTCTGTCACCAAGAGACGATGATTATTGAATAATGGTCTGCAGGGAACCTAGTG