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Detailed information on CNT30303776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Triticum aestivumSetaria viridis44.639.5789.25186forward
CNT30350309Triticum aestivumEragrostis tef40.2928.8786.31168forward
CNT30368340Triticum aestivumSorghum bicolor44.8441.3788.77187forward
CNT30557458Triticum aestivumPanicum hallii44.8437.488.24187forward

Expression of CNT30303776

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PPNCTYDNQKRSGERKTQMLMKMTRDAMH*

>peptide 2 (54 aa)
MLLLTGSERWSRRFWKGPTPVKMACRDMPRKASMARRPFLISLSLSSFISFSLLV

>peptide 3 (50 aa)
MHAARVQIYILHPPSHIYLSHAHDDDARIGSDRFRLVELEAGEDVVVDGV*

Sequence

>CNT30303776
GCCGCCTAATTGCACGTACGATAACCAGAAGAGGAGCGGGGAAAGAAAGACACAGATGTTGATGAAGATGACGAGAGATGCAATGCACTAATTTTCGTAG
CACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGACGACGATG
CTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGTTCTGGAAGG
GCCCGACGCCGGTGAAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTC
CTTCTCGCTCTTGGTCC