Detailed information on CNT30442227


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Aegilops tauschiiSetaria viridis47.9248.9488.26230forward
CNT30225382Aegilops tauschiiHordeum vulgare52.0847.2690.4250forward
CNT30350309Aegilops tauschiiEragrostis tef49.1740.5584.75236forward
CNT30368340Aegilops tauschiiSorghum bicolor46.8849.7887.56225forward
CNT30557458Aegilops tauschiiPanicum hallii44.1742.487.74212forward

Expression of CNT30442227

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KKDTDVDEDDERCNALIFVARYKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 2 (67 aa)
MLLLTGSERWSRRFWKGPTPVKMACRDMPRKASMARRPFLISLSLSSFISFSLLVPNPSGLKMGPPG*

>peptide 3 (60 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

Sequence

>CNT30442227
AAAGAAAGACACAGATGTTGATGAAGATGACGAGAGATGCAATGCACTAATTTTCGTAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACA
AATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGA
TCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGTTCTGGAAGGGCCCGACGCCG
GTGAAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTCT
TGGTCCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGGTAGGTGAGGGACTGCTTGGACGCGAACCAC