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Detailed information on CNT30641843


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516792Cannabis sativaJuglans regia10054.0481.7481forward
CNT30616460Cannabis sativaSesamum indicum87.7329.4182.7422forward
CNT30403782Cannabis sativaBeta vulgaris34.7239.9582.63167forward
CNT30524942Cannabis sativaPhaseolus vulgaris64.6646.3580.39311forward
CNT30506120Cannabis sativaNicotiana attenuata69.0256.7579.82332forward
CNT30307041Cannabis sativaTriticum aestivum57.851.8780.58278forward
CNT30400271Cannabis sativaTriticum turgidum58.4256.7780.78281forward
CNT30591858Cannabis sativaMusa acuminata93.7688.9580.71451forward
CNT3067979Cannabis sativaLeersia perrieri58.4278.0680.78281forward
CNT30688581Cannabis sativaTriticum urartu59.6749.480.14287forward
CNT30350937Cannabis sativaEragrostis tef62.7954.6182.45302forward
CNT30476914Cannabis sativaArabidopsis halleri60.9152.3283.28293forward
CNT30573855Cannabis sativaVitis vinifera98.7578.981.26475forward
CNT30149777Cannabis sativaBrachypodium distachyon67.1535.0780.19323forward
CNT30103220Cannabis sativaOryza rufipogon66.5334.4581.56320forward
CNT30497905Cannabis sativaDigitaria exilis82.3343.8579.55396forward
CNT30335476Cannabis sativaCynara cardunculus24.329.6388.89117forward

Expression of CNT30641843

Peptides detected in this lncRNA

>peptide 1 (50 aa)
DCLENKPMMDCILLIEDCNLEMLDYNLVRLDYNQEKLDCRLVKLDYRTEM*

>peptide 2 (57 aa)
MWDCKMGRLGCMLGRWDCKQGKLGCKQVRSDCNLVRLDCNLEMLDCNWVKLDCNLEK*

>peptide 3 (30 aa)
MRGCGTVRWGGWAVCWGGGTVSRGSWAVSR*

Sequence

>CNT30641843
GACTGCTTGGAGAATAAGCCAATGATGGACTGTATTTTGCTGATTGAGGATTGTAACTTGGAGATGTTGGACTATAACTTGGTGAGGTTGGACTATAACC
AGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTATAGGACGGAGATGTAGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGTGATGTAGGGCTG
TAAGAAGGTGAGGTCGGGCTGTATGAGGGGATGTGGGACTGTAAGATGGGGAGGTTGGGCTGTATGCTGGGGAGGTGGGACTGTAAGCAGGGGAAGTTGG
GCTGTAAGCAGGTGAGGTCGGACTGTAACTTGGTGAGGTTGGACTGTAACTTGGAGATGTTGGACTGTAACTGGGTGAAGTTGGACTGTAACTTGGAGAA
GTAGGGCTATAGCTTGGTGATGTGGGTGAATAAGATGGACTTGTAGGAGAATAGGCAGGACTTGTTGGACTATAGCCCGGG