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Detailed information on CNT30103220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Oryza rufipogonNymphaea colorata35.7443.8681.02332forward
CNT30316008Oryza rufipogonCorylus avellana29.3941.7482.42273forward
CNT30549269Oryza rufipogonIpomoea triloba24.7642.7581.74230forward
CNT30376158Oryza rufipogonArabidopsis thaliana34.5535.9181.62321forward
CNT30267761Oryza rufipogonChenopodium quinoa41.2346.9481.2383forward
CNT30727661Oryza rufipogonCorchorus capsularis32.5148.2483.11302forward
CNT30378927Oryza rufipogonManihot esculenta34.4551.780.62320forward
CNT30524942Oryza rufipogonPhaseolus vulgaris29.2840.5480.88272forward
CNT30628902Oryza rufipogonVigna unguiculata30.5764.1180.28284forward
CNT30490956Oryza rufipogonOlea europaea25.456.1981.78236forward
CNT3091192Oryza rufipogonSolanum tuberosum36.0648.3481.49335forward
CNT30559890Oryza rufipogonActinidia chinensis41.1255.9381.15382forward
CNT30591858Oryza rufipogonMusa acuminata42.6378.1179.55396forward
CNT30234460Oryza rufipogonBrassica oleracea37.0348.9382.56344forward
CNT30508941Oryza rufipogonSolanum lycopersicum34.7781.3681.73323forward
CNT30145737Oryza rufipogonMedicago truncatula37.0355.8480.81344forward
CNT30443444Oryza rufipogonAegilops tauschii100.54100.3281.58934forward
CNT30311681Oryza rufipogonCamelina sativa27.3435.3883.86254forward
CNT3076593Oryza rufipogonBrassica juncea31.6553.8583.67294forward
CNT30263459Oryza rufipogonBrassica rapa35.0960.2682.52326forward
CNT30140910Oryza rufipogonLolium perenne37.5797.7686.25349forward
CNT30687113Oryza rufipogonTriticum urartu56.0897.9385.6521forward
CNT30350936Oryza rufipogonEragrostis tef43.789.2387.44406forward
CNT30476941Oryza rufipogonArabidopsis halleri37.6743.781.43350forward
CNT30354661Oryza rufipogonLactuca sativa30.2550.5480.78281forward
CNT30410012Oryza rufipogonPapaver somniferum38.9795.2678.73362forward
CNT30641843Oryza rufipogonCannabis sativa34.4566.5381.56320forward
CNT3027877Oryza rufipogonTheobroma cacao38.7591.1479.44360forward

Expression of CNT30103220

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MIWCPRDGRACWCHAEVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRSKLAKHNVL

>peptide 2 (54 aa)
LVKSDCKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 3 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCKPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 4 (35 aa)
MVSQRWASVLVSCRSPGLQHSLGVEVRWPAAASDH*

>peptide 5 (74 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMVMWGCKMEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

Sequence

>CNT30103220
ATTTGGTGAAGTCTGACTGTAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGG
GTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGTGATGTGGGGCTGTAAGATGGAGAAGTTGGACTATA
TGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATGTAGGG
CTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGACGGACTGGTAGGTGAGTATGATGGACTTGTAGGGGAGTAAGTAGGAGAGC
CAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTAAACCGGAGA
AGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTA
ATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGCGAGCGTGCTGGTGTCATGC
CGAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGCAGCATCTGATCATTGAGATACAATGCACAGCCTCCTGTACCGATAGG
AGCAAGCTGGCCAAGCATAATGTTCTCAG