Detailed information on CNT30573979


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 9e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549166Vitis viniferaIpomoea triloba55.9248.5181.6326forward
CNT30403782Vitis viniferaBeta vulgaris54.3775.8479.81317forward
CNT30506119Vitis viniferaNicotiana attenuata57.9884.7182.54338forward
CNT30235097Vitis viniferaBrassica oleracea98.6371.7979.65575forward
CNT30508904Vitis viniferaSolanum lycopersicum80.175.5781.37467forward
CNT30312432Vitis viniferaCamelina sativa60.5590.7583.85353forward
CNT30216750Vitis viniferaKalanchoe fedtschenkoi77.0291.6378.84449forward
CNT30625810Vitis viniferaDaucus carota85.0873.1682.46496forward
CNT30681212Vitis viniferaTriticum urartu51.864.1279.8302forward
CNT30330867Vitis viniferaDioscorea rotundata44.0835.5583.27257forward
CNT30551544Vitis viniferaOryza brachyantha58.4949.0682.4341forward

Expression of CNT30573979

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MLDCNQERWGCMMERLDYKKVRLGYRMVRSGYRKVRLGYRKVRWGCKQEKWGCMQEKWGCMRVMLGCRQEKLDCNLEK*

>peptide 2 (35 aa)
CNLVMSDCKGLMEIVLDCWENMPVMGCILLRKDYN*

Sequence

>CNT30573979
CTGTAATTTGGTGATGTCGGACTGTAAGGGCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGAT
TATAACTAGGTGATGTAGGGCTGTAGCTTGGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTGGGGCTGTATGATGGAGAGGT
TGGACTATAAGAAGGTGAGGTTGGGCTATAGGATGGTGAGGTCGGGCTATAGGAAGGTGAGGTTGGGCTATAGGAAGGTGAGGTGGGGCTGTAAGCAGGA
GAAGTGGGGCTGTATGCAGGAGAAGTGGGGCTGTATGAGGGTGATGTTGGGCTGTAGACAGGAGAAGTTGGACTGTAACTTGGAGAAGTAGGACTGTAGC
TTGGAGATGTAGGACTGTAACTGGGAGATGTTGGGGAGTAAGATGGACTTGTGGGAGAATATGCAGGACTTGTTGGACTATATCCAGGAGAGCTGGGACT
GTATGTAGGTGAGGTAGGGCTGTAACCAGGTGAAGTGGGGCTGTATCCTGGGGAGGTTGGACTGTAGCCAGGAGAAGTAGGGC