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Detailed information on CNT30605018


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 4e-121

BLAST vs NONCODE:
NONSTUT002514, E-value = 4e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Gossypium raimondiiCorylus avellana52.135482.18331forward
CNT30374613Gossypium raimondiiArabidopsis thaliana73.8651.7781.24469forward
CNT3070976Gossypium raimondiiQuercus suber48.6660.8385.76309forward
CNT30526271Gossypium raimondiiPhaseolus vulgaris30.5529.1384.54194forward
CNT30711475Gossypium raimondiiGlycine max63.9427.8584.98406forward
CNT30561790Gossypium raimondiiActinidia chinensis71.6565.8583.74455forward
CNT30238958Gossypium raimondiiBrassica oleracea60.7943.7679.53386forward
CNT30510148Gossypium raimondiiSolanum lycopersicum41.5762.2686.74264forward
CNT30311404Gossypium raimondiiCamelina sativa74.1771.6980.04471forward
CNT3077068Gossypium raimondiiBrassica juncea71.544.7378.85454forward
CNT30264606Gossypium raimondiiBrassica rapa71.552.9879.07454forward
CNT30612591Gossypium raimondiiArabis alpina70.5556.1479.46448forward
CNT30204126Gossypium raimondiiHelianthus annuus42.5252.7381.48270forward
CNT30716010Gossypium raimondiiMalus domestica golden24.0926.3885.62153forward
CNT30625449Gossypium raimondiiDaucus carota36.6925.3386.27233forward
CNT30409807Gossypium raimondiiPapaver somniferum74.0263.7782.34470forward
CNT3035928Gossypium raimondiiCucumis melo42.256.5487.31268forward
CNT30723501Gossypium raimondiiLupinus angustifolius43.9425.8382.8279forward

Expression of CNT30605018

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDKVWVAKIVKATLGEYLRSSFEPNCLSELNSIL*

>peptide 2 (50 aa)
MGPFPVTIAWTKNPNMENIARRPFLISLTFNSANASGSSASPSGSKAPPG*

Sequence

>CNT30605018
AAAAGGATATGGATTTAATGATACAACAGCTCAAAAGACTAGCAGTGAATTACATCAGTACACAGCAACAGATGCTACATAGCAGTTAATGTTACAGCTT
TCAGAGACATATCTATAATCTAAGTTCATTTTCCGGGGACAAAGTTAGTGGCATAAGCCCATGCGAGGTTCTCAATGGGACCCTTTCCTGTGACAATAGC
CTGGACAAAGAATCCAAACATGGAGAACATTGCAAGGCGGCCATTCTTGATCTCCTTAACCTTCAATTCTGCGAACGCATCAGGATCATCAGCCAGTCCA
AGTGGGTCGAAAGCACCACCTGGGTAAATTGGGTCCAGTCCTTCACCAAGTGGTCCCCCTCCAACTCTGTATCCTTCAACAAATCCCATGAGCACAACTT
GGCAAGCCCAGATTGCAAGAATGCTCTGAGCATGGATAAGGTTTGGGTTGCCAAGATAGTCAAGGCCACCCTCGGAGAATATTTGAGATCCAGCTTTGAA
CCAAACTGCCTCTCCGAACTTAACTCCATTCTTTGAAAGAATTTCAGGGAAGACACAACCAAGGGCACCAAGCATTGCCCATCTGCAGTGGATCACTTCA
AGCTCACGGTTCTTAGCAAATGTCTCTGGGTCAGC