CANTATAdb - search

Detailed information on CNT30311404

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-147

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30701229	Camelina sativa	Quercus lobata	99.54	33.64	79.36	654	forward
CNT3070976	Camelina sativa	Quercus suber	54.34	70.28	81.51	357	forward
CNT30379012	Camelina sativa	Manihot esculenta	77.47	62.61	77.8	509	forward
CNT30631012	Camelina sativa	Vigna unguiculata	97.41	50.39	78.28	640	forward
CNT30711475	Camelina sativa	Glycine max	59.67	26.89	80.1	392	forward
CNT30539463	Camelina sativa	Brassica napus	80.06	72.85	88.59	526	forward
CNT30510148	Camelina sativa	Solanum lycopersicum	38.2	59.2	80.48	251	forward
CNT30172025	Camelina sativa	Trifolium pratense	74.28	42.29	79.3	488	forward
CNT30605018	Camelina sativa	Gossypium raimondii	71.69	74.17	80.04	471	forward
CNT30716010	Camelina sativa	Malus domestica golden	25.72	29.14	84.02	169	forward
CNT30625449	Camelina sativa	Daucus carota	44.14	31.52	81.72	290	forward
CNT30360562	Camelina sativa	Lactuca sativa	63.17	45.55	81.93	415	forward
CNT30410959	Camelina sativa	Papaver somniferum	82.8	61.19	78.86	544	forward

Expression of CNT30311404

Peptides detected in this lncRNA

>peptide 1 (43 aa)
LFSGDEVGGESPSIVSHRVCDMIEQVLDRTFTRNNGLNKESKH*

>peptide 2 (41 aa)
MFLDQRRDRLYPSHSLQGILLLGMMACFPRMVLGIWDGLVRT

Sequence

>CNT30311404
CTCTATTTTCCGGGGACGAAGTTGGTGGCGAAAGCCCAAGCATTGTTAGCCACAGGGTCTGCGATATGATCGAACAGGTTCTCGATCGGACCTTTACCCG
TAACAATGGCTTGAACAAAGAATCCAAACATTGAGAACATTGCAAGACGACCGTTCTTGAGCTCCTTCACCTTCAATTCGGAGAAAGCCTCTGGATCCTC
TGCTAGGTTCAACGGGTCAAACGCCCCGCCTGGGTAAAGCGGGTCAAGTCCTTCACCAAGAGGACCACCTCCGATTCTGTATCCTTCAATGAAACCCATG
AGCACAACTTGACATGCCCAGATAGCCAATATGCTTTGCGCATGGATCAAGTTAGGGTTTCCTAGGTAGTCAAGCCCTCCTTCTGAGAAGATCTGAGATC
CCGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTGGAGAGGATCTCCGGGAAGGTGCAGCCCAAAGCACCCAACATTGCCCATCTACTGTG
GATTACTTCGAGCTCACGGTTCTTTGCGAATGTTTCTGGATCAGCGGAGAGACCGGCTGTATCCCAGCCATAGTCTCCAGGGTATTCTCCTGTTAGGTAT
GATGGCGTGTTTTCCGAGAATGGTCCTAGGTATTTGGGACGGTCTGGTCCGTACCTG