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Detailed information on CNT30561790


BLAST search results

BLAST vs Swiss-Prot:
sp|P14278|CB24_SOLLC, E-value = 5e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Actinidia chinensisQuercus lobata75.6926.982.6523forward
CNT30500934Actinidia chinensisCoffea canephora49.6421.3882.8343forward
CNT3070976Actinidia chinensisQuercus suber45.361.6183.07313forward
CNT30379012Actinidia chinensisManihot esculenta76.765.1982.64530forward
CNT30631012Actinidia chinensisVigna unguiculata74.3840.4780.16514forward
CNT30711475Actinidia chinensisGlycine max51.3724.3580.56355forward
CNT30539463Actinidia chinensisBrassica napus75.1171.8879.19519forward
CNT30510148Actinidia chinensisSolanum lycopersicum36.4759.4386.51252forward
CNT30172025Actinidia chinensisTrifolium pratense75.5445.2379.69522forward
CNT30612591Actinidia chinensisArabis alpina75.465.2978.89521forward
CNT30605018Actinidia chinensisGossypium raimondii65.8571.6583.74455forward
CNT30648173Actinidia chinensisRosa chinensis77.1330.6984.05533forward
CNT30204126Actinidia chinensisHelianthus annuus43.1358.282.21298forward
CNT30410959Actinidia chinensisPapaver somniferum75.6958.8380.11523forward
CNT3035928Actinidia chinensisCucumis melo37.6354.8583.08260forward

Expression of CNT30561790

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MAQREWITSSSRFLAKAACWIAEVAITLRSFFVAYVFSQWFVVGWCEEE

>peptide 2 (43 aa)
MAWTKNPNIENIASRPFLSSFTFNSANASGSSASPSGSKAPPG*

>peptide 3 (38 aa)
MPLGHRPVQVGQRLLQGRSCRALHQVGLRQPGIPQQSP*

>peptide 4 (29 aa)
STGRETQLHQEALVMFQLTLHFPGTKLVA*

Sequence

>CNT30561790
CATCCACAGGTAGAGAAACTCAATTACATCAAGAAGCTCTAGTAATGTTTCAGCTCACTCTTCATTTTCCGGGTACGAAGTTAGTGGCATAAGCCCATGC
ATTGTTGGCCACAGGATCAGCAAGGTGGTCGGAAAGGTTCTCAATTGGGCCCTTTCCAGTAACGATGGCCTGGACGAAGAATCCGAACATCGAAAACATT
GCTAGCCGGCCATTCTTGAGCTCCTTCACCTTCAATTCTGCAAATGCCTCTGGGTCATCGGCCAGTCCAAGTGGGTCAAAGGCTCCTCCAGGGTAGATCT
TGTCGAGCCCTTCACCAAGTGGGCCTCCGCCAACCCGGTATCCCTCAACAAAGCCCATGAGCACCACTTGGCAGGCCCAGATCGCAAGGATGCTCTGGGC
GTGGACGAGGTTAGGGTTTCCGAGGTAATCAAGGCCGCCTTCGGAGAAAATTTGGGATCCGGCCTTGAACCAAACTGCCTCGCCGAACTTGACACCGTTC
TTGGAAAGGATTTCAGGGAACACACAGCCCAGTGCACCGAGCATGGCCCAGCGGGAGTGGATCACTTCGAGCTCACGGTTCTTGGCAAAGGCTGCGTGTT
GGATAGCGGAGGTCGCCATTACTCTGCGGAGCTTCTTTGTTGCTTATGTTTTTTCACAATGGTTTGTTGTAGGATGGTGTGAAGAAGAAGA