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Detailed information on CNT30374613


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7J7|CB22_ARATH, E-value = 3e-126

BLAST vs NONCODE:
NONATHT001041, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30172025Arabidopsis thalianaTrifolium pratense62.6949.2279.58568forward
CNT30605018Arabidopsis thalianaGossypium raimondii51.7773.8681.24469forward
CNT30410959Arabidopsis thalianaPapaver somniferum36.3137.0183.28329forward
CNT30119392Arabidopsis thalianaCitrus clementina37.6437.1180.35341forward

Expression of CNT30374613

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSPGQPRVQRCPSRSLRGNQDLLLRKSENLP*

>peptide 2 (50 aa)
MGPLPVTMAWTKNPNIENMARRPFLSSFTFSSEKASGSSAKFNGSNAPPG*

>peptide 3 (48 aa)
MSPGQPRVQRCPSRSLRGILRLGRTVYSPRMVLSTWDGLVRTCYKMNLV

Sequence

>CNT30374613
CAAATACATAAGATAATTACTTTCCGGGGACAAAGTTAGTAGCGTAAGACCAGGCGTTGTTAGCCACAGGATCAGCCAAATGATCAAATAAGTTCTCAAT
GGGACCTTTACCAGTAACAATGGCTTGGACAAAGAATCCAAACATAGAGAACATGGCAAGACGACCGTTCTTGAGCTCCTTCACCTTCAGCTCAGAGAAA
GCCTCTGGATCCTCAGCCAAGTTCAATGGGTCGAACGCACCTCCGGGATAAAGCGGGTCAAGTCCTTCTCCGAGTGGTCCACCTCCGATTCTGTAGCCTT
CAATGAACCCCATGAGCACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGACCTCCTTCTGA
GAAAATCTGAGAGCCTGCCTTGAACCACACGGCTTCTCCGAATTTAACACCGTTCTTGGAGAGAATTTCAGGGAATGTGCATCCGAGAGCACCCAACATA
GCCCATCTGCTGTGGATTACTTCAAGCTCACGGTTCTTAGCGAATGTCTCCGGGTCAGCCGAGAGTCCAGCGGTGTCCCAGCCGTAGTCTCCGGGGTAAT
CAAGACCTCCTTCTGAGAAAATCTGAGAACCTGCCTTGAACCACACGGCTTCTCCGAATTTAACACCGTTCTTGGAGAGAATCTCAGGGAATGTGCATCC
GAGAGCACCCAACATAGCCCATCTGCTGTGGATTACTTCAAGCTCACGGTTCTTAGCGAATGTCTCCGGGTCAGCCGAGAGTCCAGCGGTGTCCCAGCCG
TAGTCTCCGGGGTATTCTCCGGTTAGGTAGGACGGTGTATTCTCCGAGAATGGTCCTAAGTACTTGGGACGGTCTGGTCCGTACCTGTTACAAGATGAAT
TTGGTG