Detailed information on CNT30264606


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Brassica rapaQuercus lobata62.6627.6280.07537forward
CNT30374000Brassica rapaArabidopsis thaliana60.445988.42518forward
CNT30379012Brassica rapaManihot esculenta61.3864.777.95526forward
CNT30631012Brassica rapaVigna unguiculata60.6840.9479.81520forward
CNT30711475Brassica rapaGlycine max47.0227.6480.15403forward
CNT3085816Brassica rapaVigna radiata24.6233.0781.04211forward
CNT30543607Brassica rapaBrassica napus50.0680.9493.24429forward
CNT30238958Brassica rapaBrassica oleracea55.6654.0897.48477forward
CNT30172025Brassica rapaTrifolium pratense51.5838.379.86442forward
CNT30311416Brassica rapaCamelina sativa62.4354.0490.84535forward
CNT3077068Brassica rapaBrassica juncea75.9664.1499.39651forward
CNT30612591Brassica rapaArabis alpina62.7867.4291.45538forward
CNT30605018Brassica rapaGossypium raimondii52.9871.579.07454forward
CNT30480205Brassica rapaArabidopsis halleri49.5956.2992425forward
CNT30360562Brassica rapaLactuca sativa61.0357.4180.88523forward
CNT30410959Brassica rapaPapaver somniferum60.6858.4977.31520forward
CNT30119392Brassica rapaCitrus clementina34.7732.4381.21298forward
CNT30114814Brassica rapaEutrema salsugineum60.4462.8692.47518forward

Expression of CNT30264606

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASRPFLSSFTFNSENASGSSAKFNGSNAPPG*

>peptide 2 (41 aa)
MTTRPPLEAPTLRRRSLEGLRAVWPAKEECWIAEVAILLYL*

>peptide 3 (32 aa)
VGLYISFTTHIKARDLNIFHALKIEDKKKLHD*

>peptide 4 (75 aa)
MIKQVLNRTFTSNNSLDKESKHREHGKPTVLELLHFQLRERLWILGQVQRVKRPTRVKRVKTFTKGPTSDSVPFD*

Sequence

>CNT30264606
TGGTAGGTTTATATATTTCTTTCACCACGCACATTAAAGCAAGAGATTTAAATATTTTCCATGCATTAAAAATTGAAGATAAAAAAAAATTACATGATTA
ATCCGATCAAATTCTATTTTCCGGGAACAAAGTTGGTGGCGTAAGCCCAGGCATTGTTAGCCACAGGGTCCGCAACATGATCAAACAAGTTCTCAATCGG
ACCTTTACCAGTAACAATAGCTTGGACAAAGAATCCAAACATAGAGAACATGGCAAGCCGACCGTTCTTGAGCTCCTTCACTTTCAACTCCGAGAACGCC
TCTGGATCCTCGGCCAAGTTCAACGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGACCTTCACCAAGGGGCCCACCTCCGATTCTGTACCCTTCGA
TTAAACCCATTAGCACAACTTGAGATGCCCAAATAGCTAAAATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAGTCAAGTCCTCCTTCTGAGAA
GATCTGGGAACCTGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGGTGCAGCCCAAAGCGCCTAGCATTGCC
CATCTGCTGTGGATTACTTCGAGCTCACGGTTCTTGGCAAAGGTTTCAGGGAACCAGATGCTCTGAGGAGTAGACTTGACGGTACGACGCATGACCACGC
GGCCACCGTTGGAAGCTCCGACTTTGCGGAGGAGATCGTTGGAGGGCTTGAGGGCCGTTTGGCCAGCAAAAGAGGAGTGTTGGATAGCTGAAGTAGCCAT
TCTTTTATATCTTTAACTCCAAACAAGAACACAAATGAAAGAGAGAAACAGGCAAAG