Detailed information on CNT3077068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 3e-177

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Brassica junceaQuercus lobata63.4533.1379.66644forward
CNT30373962Brassica junceaArabidopsis thaliana63.5557.8588.53645forward
CNT3070976Brassica junceaQuercus suber35.1770.2881.23357forward
CNT30378916Brassica junceaManihot esculenta63.3550.1277.6643forward
CNT30631012Brassica junceaVigna unguiculata61.8749.4579.78628forward
CNT30708305Brassica junceaGlycine max27.1934.1682.25276forward
CNT30124866Brassica junceaPhyscomitrium patens15.8628.2583.85161forward
CNT30543607Brassica junceaBrassica napus42.5681.5193.06432forward
CNT30238958Brassica junceaBrassica oleracea4754.0897.27477forward
CNT30172025Brassica junceaTrifolium pratense48.4742.6379.88492forward
CNT30311416Brassica junceaCamelina sativa65.2266.8789.58662forward
CNT30264606Brassica junceaBrassica rapa64.1475.9699.39651forward
CNT30612591Brassica junceaArabis alpina64.3381.8390.66653forward
CNT30605018Brassica junceaGossypium raimondii44.7371.578.85454forward
CNT30480205Brassica junceaArabidopsis halleri72.8197.8888.77739forward
CNT30360562Brassica junceaLactuca sativa63.3570.5880.72643forward
CNT30326027Brassica junceaAsparagus officinalis34.9862.3982.82355forward
CNT30331118Brassica junceaDioscorea rotundata30.2552.4880.13307forward
CNT30114814Brassica junceaEutrema salsugineum77.8395.8791.65790forward

Expression of CNT3077068

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTTRPPLEAPTLRRRSLEGLRAVWPAKEECWIAEVAILLYL*

>peptide 2 (43 aa)
MAWTKNPNIENMASRPFLSSFTFNSENASGSSAKFNGSNAPPG*

>peptide 3 (75 aa)
MIKQVLNRTFTSNNGLDKESKHREHGKPTVLELLHFQLRERLWILGQVQRVKRPTRVKRVKTFTKGPTSDSVPFD*

>peptide 4 (53 aa)
VHAVFCLVGLYISFTTHIKARDLNIFHALKIEDKKNYMINPIKFYFPGTKLVA*

Sequence

>CNT3077068
GTTCATGCAGTGTTTTGTTTGGTAGGTTTATATATTTCTTTCACCACGCACATTAAAGCAAGAGATTTAAATATTTTCCATGCATTAAAAATTGAAGATA
AAAAAAATTACATGATTAATCCGATCAAATTCTATTTTCCGGGAACAAAGTTGGTGGCGTAAGCCCAGGCATTGTTAGCCACAGGGTCCGCAACATGATC
AAACAAGTTCTCAATCGGACCTTTACCAGTAACAATGGCTTGGACAAAGAATCCAAACATAGAGAACATGGCAAGCCGACCGTTCTTGAGCTCCTTCACT
TTCAACTCCGAGAACGCCTCTGGATCCTCGGCCAAGTTCAACGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGACCTTCACCAAGGGGCCCACCTC
CGATTCTGTACCCTTCGATTAAACCCATTAGCACAACTTGAGATGCCCAAATAGCTAAAATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAGTC
AAGTCCGCCTTCTGAGAAGATCTGGGAACCTGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGGTGCAGCCC
AAAGCGCCTAGCATTGCCCATCTGCTGTGGATTACTTCGAGCTCACGGTTCTTCGCAAAGGTTTCAGGGTCGGCAGAGAGACCGGCGGTGTCCCAGCCGT
AGTCTCCGGGGTATTCACCGGTTAGGTACGACGGTGTGTTCTCTGAGAATGGACCTAAGTACTTGGGACGGTCTGGTCCGAACCAGATGCTCTGAGGAGT
AGACTTGACGGTACGACGCATGACCACGCGGCCACCGTTGGAAGCTCCAACTTTGCGGAGGAGATCGTTGGAGGGCTTGAGGGCCGTTTGGCCAGCAAAA
GAGGAGTGTTGGATAGCTGAAGTAGCCATTCTTTTATATCTTTAACTCCAAACAAGAACACAAATGAAAGAGAGAAACAGGCAAAGTTAAGATGAGATGG
TTGGTGTTATGTTAT