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Detailed information on CNT30526271


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHR7|CB21_ARATH, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Phaseolus vulgarisJuglans regia27.3312.0485.71182forward
CNT30701193Phaseolus vulgarisQuercus lobata28.8315.2586.98192forward
CNT30500934Phaseolus vulgarisCoffea canephora26.8811.1686.03179forward
CNT3070976Phaseolus vulgarisQuercus suber26.1334.2589.08174forward
CNT30379012Phaseolus vulgarisManihot esculenta29.1323.8684.54194forward
CNT30631035Phaseolus vulgarisVigna unguiculata54.0580.5495.28360forward
CNT30708353Phaseolus vulgarisGlycine max28.9824.3795.85193forward
CNT3085816Phaseolus vulgarisVigna radiata31.2332.696.63208forward
CNT30510148Phaseolus vulgarisSolanum lycopersicum24.9239.1583.73166forward
CNT30172058Phaseolus vulgarisTrifolium pratense31.9814.0488.73213forward
CNT30145752Phaseolus vulgarisMedicago truncatula15.3230.3692.16102forward
CNT30605018Phaseolus vulgarisGossypium raimondii29.1330.5584.54194forward
CNT30649322Phaseolus vulgarisRosa chinensis29.1343.9984.02194forward
CNT30204126Phaseolus vulgarisHelianthus annuus26.4334.3886.36176forward
CNT30625449Phaseolus vulgarisDaucus carota25.6818.5984.8171forward
CNT30360875Phaseolus vulgarisLactuca sativa27.4824.3783.61183forward
CNT30119392Phaseolus vulgarisCitrus clementina25.6818.6189.47171forward
CNT3035896Phaseolus vulgarisCucumis melo28.382187.83189forward
CNT30331118Phaseolus vulgarisDioscorea rotundata28.3832.3183.6189forward
CNT30723501Phaseolus vulgarisLupinus angustifolius28.8317.7889.58192forward

Expression of CNT30526271

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MVVEVLNRALASDNGLNKETKHGEHGQSTILEFLDLQLSKCIRAFTKRSSTNSVPFNKPHQHNLNSPDGKNALSMD*

>peptide 2 (29 aa)
MIIVQGQSWWHKPKHCWQQGQQHGRRGSE*

>peptide 3 (32 aa)
IYIIVLMQILQEQKIALHLKRHDHCPGTKLVA*

>peptide 4 (42 aa)
MENMANLPFLSSLTFNSANASGPSPRGPPPTLYPSTNPISTT*

>peptide 5 (56 aa)
MHQGLHQEVLHQLCTLQQTPSAQPEQPRWQECSEHGLGLGSPNSQALPQRRSVHQP*

Sequence

>CNT30526271
GGATATATATAATTGTTCTCATGCAGATTCTTCAGGAGCAGAAGATTGCATTGCATCTAAAAAGACATGATCATTGTCCAGGGACAAAGTTGGTGGCATA
AGCCCAAGCATTGTTGGCAACAGGGTCAGCAACATGGTCGTAGAGGTTCTGAATAGGGCCCTTGCCAGTGACAATGGCCTGAACAAAGAAACCAAACATG
GAGAACATGGCCAATCTACCATTCTTGAGTTCCTTGACCTTCAACTCAGCAAATGCATCAGGGCCTTCACCAAGAGGTCCTCCACCAACTCTGTACCCTT
CAACAAACCCCATCAGCACAACCTGAACAGCCCAGATGGCAAGAATGCTCTGAGCATGGACTAGGTTTGGGTTCCCCAAATAGTCAAGCCCTCCCTCAGA
GAAGATCTGTGCACCAGCCTTGAACCACACTGCCTCACCGAATTTCACACCATTCTTCTCAAGGATCTCTGGGAAGATGCTCTGAGGAGCACTCTTGACG
GTACGGCGCATGTTGGTGCGACCTTTGCCGGAGCCACCGGTCTTGCGGACGAATTCATTGACCTGCTTCAGAGCTGTTTGACCAGCGAATGCTGATTGCT
GGAAAGCAGAGGTGGCCATGGCTCTGTTGTGTTGGCAAAGGTTCTTCTTTCTGTGGTTTTGTGAGT