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Detailed information on CNT30204126


BLAST search results

BLAST vs Swiss-Prot:
sp|P27494|CB23_TOBAC, E-value = 9e-105

BLAST vs NONCODE:
NONSTUT002514, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Helianthus annuusQuercus lobata66.4127.0182.65340forward
CNT30500934Helianthus annuusCoffea canephora54.4917.3982.08279forward
CNT3070976Helianthus annuusQuercus suber69.5370.0881.46356forward
CNT30378910Helianthus annuusManihot esculenta53.1223.4783.09272forward
CNT30404043Helianthus annuusBeta vulgaris24.4111.3388125forward
CNT30526271Helianthus annuusPhaseolus vulgaris34.3826.4386.36176forward
CNT30631012Helianthus annuusVigna unguiculata67.3827.1781.16345forward
CNT30711475Helianthus annuusGlycine max52.9318.5983.03271forward
CNT3046620Helianthus annuusPrunus dulcis23.2419.3588.24119forward
CNT30561790Helianthus annuusActinidia chinensis58.243.1382.21298forward
CNT30172025Helianthus annuusTrifolium pratense69.9231.0281.01358forward
CNT30605018Helianthus annuusGossypium raimondii52.7342.5281.48270forward
CNT30625449Helianthus annuusDaucus carota46.0925.6582.63236forward
CNT30360562Helianthus annuusLactuca sativa66.637.4386.8341forward
CNT30409807Helianthus annuusPapaver somniferum53.1236.9181.99272forward
CNT30572302Helianthus annuusVitis vinifera32.0323.7384.15164forward
CNT3028352Helianthus annuusTheobroma cacao22.0712.2289.38113forward
CNT30119392Helianthus annuusCitrus clementina40.2322.4283.98206forward
CNT3035928Helianthus annuusCucumis melo47.6651.4884.02244forward

Expression of CNT30204126

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDQVRVPECTEHGPPRVDHLELTVLGECLGVSG*

>peptide 2 (35 aa)
MHLGHQPTQVGQKTLLGKSCPALPRVGRHQHGILQ*

>peptide 3 (35 aa)
MENIANRPFLSSLTFNSANASGSSANPSGSKDPPG*

>peptide 4 (47 aa)
MAKMLCAWIKFGFPSAPSMAHLEWITSSSRFLANVSGSADNPAVSHP*

>peptide 5 (87 aa)
MVKQVLNWALSCHNGLNKEPKHGKHSQSTILKLLNLQLSKCIWVISQPKWVKRPSWVNLVQPFPEWAATNTVSFNEAHENNLRSPDG*

Sequence

>CNT30204126
CCCATAACCATGATCAAATTTACAATCATTCAACTTATTTTCCGGGCACAAAGTTGGTAGCATAAGCCCAAGCGTTGTTAGCTACTGGGTCACTAAGATG
GTCAAACAAGTTCTCAATTGGGCCCTTTCCTGTCACAATGGCCTGAACAAAGAACCCAAACATGGAAAACATAGCCAATCGACCATTCTTAAGCTCCTTA
ACCTTCAACTCAGCAAATGCATCTGGGTCATCAGCCAACCCAAGTGGGTCAAAAGACCCTCCTGGGTAAATCTTGTCCAGCCCTTCCCCGAGTGGGCCGC
CACCAACACGGTATCCTTCAATGAGGCCCATGAGAACAACCTGAGAAGCCCAGATGGCTAAGATGCTCTGTGCATGGATCAAGTTCGGGTTCCCGAGTGC
ACCGAGCATGGCCCACCTAGAGTGGATCACCTCGAGCTCACGGTTCTTGGCGAATGTCTCGGGGTCAGCGGATAATCCGGCGGTGTCCCACCCGTAGTCA
CCGGGGAATTCA