Detailed information on CNT30317234


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 7e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Corylus avellanaJuglans regia54.1621.9685.24332forward
CNT30701193Corylus avellanaQuercus lobata55.9527.2485.42343forward
CNT3070976Corylus avellanaQuercus suber38.0145.8787.55233forward
CNT30379012Corylus avellanaManihot esculenta55.6341.9484.46341forward
CNT30631092Corylus avellanaVigna unguiculata52.6928.5681.73323forward
CNT30711475Corylus avellanaGlycine max47.4719.9683.51291forward
CNT30560172Corylus avellanaActinidia chinensis36.2223.2288.29222forward
CNT30172025Corylus avellanaTrifolium pratense36.0519.1584.62221forward
CNT30605018Corylus avellanaGossypium raimondii5452.1382.18331forward
CNT30716010Corylus avellanaMalus domestica golden36.5438.6285.71224forward
CNT30119392Corylus avellanaCitrus clementina52.5335.0483.54322forward
CNT3035896Corylus avellanaCucumis melo31.1621.2286.39191forward
CNT30331118Corylus avellanaDioscorea rotundata33.2834.8785.78204forward
CNT30112551Corylus avellanaFicus carica55.6355.0981.82341forward

Expression of CNT30317234

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MENIASRPFFSSFTFSSANASGSSASPSGSNAPPGPSGSNAPPG*

>peptide 2 (68 aa)
MNQVRVAEIIEAALGEDLRTCLEPDCLAELDAVLREELREDAAESSEHGPSAVDHLKLTVPGKCLGIC*

>peptide 3 (44 aa)
MLPGHQPVQAGQMHHPVQAGQMHHPGKLGRVLRRVVLRQPCTLR*

Sequence

>CNT30317234
GCCACAAATTTAATATTCTGTTTTAGATTTCTTCATTTTCCGGGCACAAAGTTGGTGGCGTAAGCCCATGCATTGTTGGCCACCGGGTCAGCAAGGTGGT
CAGAGAGGTTCTCAATGGGGCCCTTTCCGGTGACAATCGCCTGAACGAAGAAACCGAACATGGAGAACATTGCCAGCCGCCCGTTCTTCAGTTCCTTCAC
CTTCAGCTCTGCAAATGCTTCCGGGTCATCAGCCAGTCCAAGCGGGTCAAATGCACCACCCGGTCCAAGCGGGTCAAATGCACCACCCGGGTAAATTGGG
TCGAGTCCTTCGCCGAGTGGTCCTCCGCCAACCCTGTACCCTTCGATGAACCCCATGAGCACAACCTGAACGGCCCAGATTGCCAGGATGCTCTGTGCAT
GAATCAAGTTCGGGTTGCCGAGATAATCGAGGCCGCCCTCGGAGAAGATCTGAGAACCTGCCTTGAACCAGACTGCCTCGCCGAACTTGACGCCGTTCTT
CGAGAGGAGCTCCGGGAAGACGCAGCCGAGAGCTCCGAGCATGGCCCATCGGCTGTGGATCACCTCAAGCTCACGGTTCCTGGCAAATGTCTCGGGATCT
GCTGACAAACCGG