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Detailed information on CNT30238958


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Brassica oleraceaQuercus lobata47.5133.2881.15419forward
CNT30374000Brassica oleraceaArabidopsis thaliana51.5951.8288.13455forward
CNT3070976Brassica oleraceaQuercus suber40.4870.2881.79357forward
CNT30510148Brassica oleraceaSolanum lycopersicum13.4928.0783.19119forward
CNT30311416Brassica oleraceaCamelina sativa53.6347.7890.49473forward
CNT3077068Brassica oleraceaBrassica juncea54.084797.27477forward
CNT30264606Brassica oleraceaBrassica rapa54.0855.6697.48477forward
CNT30605018Brassica oleraceaGossypium raimondii43.7660.7979.53386forward
CNT30331118Brassica oleraceaDioscorea rotundata18.8228.3884.34166forward

Expression of CNT30238958

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIKQVLNRTFTSNNRLDKESKHGEHGKPTVL*

>peptide 2 (49 aa)
MTTRPPPLEAPTLRRRSLEGFRAVWPVKEECWIAEVAILLYLNSKQEHK*

>peptide 3 (35 aa)
MENMASRPFFSSFTFNSENASGSSAKFNGSNAPPG*

Sequence

>CNT30238958
GGTTTGAATCCGATACGGCGGTTAAGTAATATTTTTTATAGTTTGTAATAGCATAATTATTAGTATTAAAATAAAATCTACAAACGGTACACATTTTGGA
TGTTCATGCGGTGTTTTGTTTGGTAGGTTTATATATTTTTTTCACCAAGCATATCAAACCAAGAGACTTAAATATTTAAAAGTTGAAAGATACAAAAAAA
AATTACATAAATTAATCCAATCAAATTCTATTTTCCGGGAACAAAGTTGGTGGCGTAAGCCCATGCATTGTTAGCCACAGGGTCCGCAACATGATCAAAC
AAGTTCTCAATCGGACCTTTACCAGTAACAATCGCTTGGACAAAGAATCCAAACATGGAGAACATGGCAAGCCGACCGTTCTTTAGCTCCTTCACTTTCA
ATTCCGAGAACGCCTCTGGATCCTCAGCTAAGTTCAACGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGACCTTCACCAAGGGGCCCACCTCCGAT
TCTGTACCCTTCGATTAAACCCATTAGCACAACTTGAGATGCCCAAATAGCTAAAATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAGTCAAGT
CCTCCTTCTGAGAAGATCTGAGATCCTGCCTTGAACCATACGGCTTCTCCGAATTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGTAGACTTGACGGT
ACGACGCATGACGACGCGGCCACCACCGTTGGAAGCTCCGACTTTGCGTAGGAGATCGTTGGAGGGCTTCAGGGCCGTTTGGCCAGTAAAAGAGGAGTGT
TGGATAGCTGAAGTAGCCATTCTTTTATATCTTAACTCCAAACAAGAACACAAATGAAAGAGAAAAACAAGCAAAGTTAAGA