Detailed information on CNT30612591


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 7e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Arabis alpinaQuercus lobata79.5732.6679.53635forward
CNT30373962Arabis alpinaArabidopsis thaliana81.3358.2186.44649forward
CNT3070976Arabis alpinaQuercus suber45.6171.6581.87364forward
CNT30378978Arabis alpinaManihot esculenta76.8253.4478.96613forward
CNT30631012Arabis alpinaVigna unguiculata78.5749.3778.95627forward
CNT30711471Arabis alpinaGlycine max33.7119.8782.16269forward
CNT30561790Arabis alpinaActinidia chinensis65.2975.478.89521forward
CNT30543607Arabis alpinaBrassica napus53.138093.16424forward
CNT30238815Arabis alpinaBrassica oleracea59.527192475forward
CNT30510148Arabis alpinaSolanum lycopersicum21.4340.3381.87171forward
CNT30172025Arabis alpinaTrifolium pratense72.5650.1778.58579forward
CNT30311416Arabis alpinaCamelina sativa82.2166.2690.24656forward
CNT3077068Arabis alpinaBrassica juncea81.8364.3390.66653forward
CNT30264606Arabis alpinaBrassica rapa67.4262.7891.45538forward
CNT30605018Arabis alpinaGossypium raimondii56.1470.5579.46448forward
CNT30625449Arabis alpinaDaucus carota36.9732.0780295forward
CNT30480205Arabis alpinaArabidopsis halleri68.0571.9291.9543forward
CNT30410959Arabis alpinaPapaver somniferum68.361.378.53545forward
CNT30572302Arabis alpinaVitis vinifera20.824.0283.13166forward
CNT3022417Arabis alpinaPopulus trichocarpa18.9258.7582.78151forward
CNT30326027Arabis alpinaAsparagus officinalis36.8451.6782.99294forward
CNT30119392Arabis alpinaCitrus clementina51.8845.0579.71414forward
CNT3036398Arabis alpinaCucumis melo25.0636.182200forward
CNT30331118Arabis alpinaDioscorea rotundata19.0525.9887.5152forward
CNT30114814Arabis alpinaEutrema salsugineum81.3378.7691.83649forward

Expression of CNT30612591

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVLSTWDGLLRTCHIFLLGYKFDFLVIKYVKN*

>peptide 2 (46 aa)
MLLDPQLSSTGQTLHPGKAGQDLHQEVHLRFCTLQLNPLEQLEKPI*

>peptide 3 (47 aa)
RSIILFPGDEVGGVSPSIVSHRISQMIVQVLDRTFASNNSLNKESKH*

Sequence

>CNT30612591
CCGATCAATAATTCTATTTCCCGGGGACGAAGTTGGTGGCGTAAGCCCAAGCATTGTTAGCCACAGGATCAGCCAAATGATCGTACAAGTTCTCGATCGG
ACCTTTGCCAGTAACAATAGCTTGAACAAAGAATCCAAACATTGAGAACATCGCAAGCCGGCCATTCTTGAGCTCCTTCACTTTTAATTCTGAAAATGCT
TCTGGATCCTCAGCTAAGTTCAACGGGTCAAACGCTCCACCCGGGTAAAGCGGGTCAAGACCTTCACCAAGAGGTCCACCTCCGATTCTGTACCCTTCAA
TTAAACCCATTAGAACAACTTGAGAAGCCCATATAGCTAATATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGCCCTCCTTCTGAGAA
GATTTGAGATCCTGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTCGACAGAATCTCTGGGAAGGTGCAGCCTAAAGCGCCGAGCATTGCC
CATCTACTGTGGATCACTTCGAGCTCACGGTTCTTTGCGAAGGTTTCTGGATCGGCAGAGAGACCAGCAGTGTCCCATCCATAGTCTCCAGGGTATTCTC
CGGTTAGGTAGGACGGTGTGTTTTCAGAGAATGGTCCTAAGTACTTGGGACGGTCTGCTCCGTACCTGTCACATTTTTTTGTTGGGTTATAAATTCGATT
TTTTGGTAATTAAATATGTCAAAAATTGAGGATCCAAAAAACAAACAAAGTTCTAATATGGTCAAATATGCATAAATCGAAACACTATTTAGACATAG