Detailed information on CNT3035928


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 7e-79

BLAST vs NONCODE:
NONSTUT002514, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070976Cucumis meloQuercus suber55.4951.7783.27263forward
CNT30379168Cucumis meloManihot esculenta72.5729.9183.14344forward
CNT30631012Cucumis meloVigna unguiculata54.0120.1683.98256forward
CNT30711475Cucumis meloGlycine max56.5418.3885.82268forward
CNT30561790Cucumis meloActinidia chinensis54.8537.6383.08260forward
CNT30510148Cucumis meloSolanum lycopersicum46.8452.3683.33222forward
CNT30172025Cucumis meloTrifolium pratense52.3221.4983.87248forward
CNT30605018Cucumis meloGossypium raimondii56.5442.287.31268forward
CNT30204126Cucumis meloHelianthus annuus51.4847.6684.02244forward
CNT30572302Cucumis meloVitis vinifera34.623.7386.59164forward

Expression of CNT3035928

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIFRRCLSVVKQIVVSYRFLHFPGTKLVA*

>peptide 2 (35 aa)
MENIASLPFLSSLTFNSANASGSSANPSGSKAPPG*

>peptide 3 (38 aa)
MHLGHLPIRVGRRHLLGKLGLVLHRGDRHQHGNLQQSP*

>peptide 4 (89 aa)
MLKCGKTDCCFLQVSSFSGNKVGCISPCIVGNRICNMVKEILNSLDKESEHGEHCQPSILKFLDLQLSKCIWVICQSEWVEGTSWVNWV*

Sequence

>CNT3035928
TTTTGAACTTTAATGATACAGATTTAATTTCAGGGAGTCTCTACTTGAGAAATTACATCAACATATGATTTTCAGGAGATGCTTAAGTGTGGTAAAACAG
ATTGTTGTTTCCTACAGGTTTCTTCATTTTCCGGGAACAAAGTTGGTTGCATAAGCCCATGCATTGTTGGCAACAGGATCTGCAACATGGTCAAAGAGAT
TCTCAATAGCCTGGACAAAGAATCCGAACATGGAGAACATTGCCAGCCTTCCATTCTTAAGTTCCTTGACCTTCAACTCAGCAAATGCATCTGGGTCATC
TGCCAATCCGAGTGGGTCGAAGGCACCTCCTGGGTAAATTGGGTCTAGTCCTTCACCGAGGGGACCGCCACCAACACGGTAACCTTCAACAAAGCCCATG
AGCACAACCTGGCAAGCCCAGATTGCAAGGATACTCTGAGCATGGATAAGGTTTGGGTTGCCAAGGTAGTCTAG