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Detailed information on CNT30544645


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Brassica napusSetaria viridis32.8339.4291.01367forward
CNT30548493Brassica napusIpomoea triloba22.7231.4796.85254reverse complement
CNT30405732Brassica napusBeta vulgaris33.4530.2193.05374forward
CNT30201968Brassica napusPisum sativum42.3159.293.87473forward
CNT30164425Brassica napusPistacia vera22.7213.6996.06254reverse complement
CNT30181606Brassica napusSecale cereale42.7528.0890.79478forward
CNT30307642Brassica napusTriticum aestivum42.7555.1390.79478forward
CNT30239187Brassica napusBrassica oleracea100.0992.0298.751119forward
CNT30510913Brassica napusSolanum lycopersicum22.5433.8794.44252reverse complement
CNT3061148Brassica napusArabidopsis lyrata8.7739.3683.6798reverse complement
CNT3079706Brassica napusBrassica juncea95.7194.6999.631070forward
CNT30681493Brassica napusTriticum urartu42.7528.5790.79478forward
CNT30596463Brassica napusOryza meridionalis16.1944.6986.74181forward
CNT3058969Brassica napusAmborella trichopoda7.7820.0589.6687forward
CNT30104396Brassica napusOryza rufipogon23.0824.0292.25258forward

Expression of CNT30544645

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GDVVVDTLVNVGRWLHLFSPSTTCCCCRHIPYVT*

>peptide 2 (29 aa)
MSLSHLCLAAGQHLRKKRRTSFSDSAIAL*

>peptide 3 (90 aa)
MSSRMLRSKIRSKIFDLPFPSRHGKERQKSERDDSLRSCPIPLVPEMHLLRRPFHPSPPPLTLAWTPPHQLFLHKTTTLQSNLIESSQSN*

>peptide 4 (45 aa)
MLSIFLEHKLKWPSVNRHSFDEIISFKIFFSFSICCLSRVWKISS*

>peptide 5 (65 aa)
RGCSCRYVSQRGSLAPPVLSFYDMLLLSPYSICHLVISASLRVSTSERNGGLHSVTPRSPSERSE*

Sequence

>CNT30544645
CGGGGATGTAGTTGTAGATACGTTAGTCAACGTGGGTCGTTGGCTCCACCTGTTCTCTCCTTCTACGACATGCTGTTGTTGTCGCCATATTCCATATGTC
ACTTAGTCATCTCTGCCTCGCTGCGGGTCAGCACCTCCGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAAGG
TAAAGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATT
TCCAATACTAATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCAAAATTCGAAGTAAAATTTTTGATTTGCCTTTTCCTAGTCGTCATGGGAAAGA
AAGGCAGAAATCTGAAAGAGATGATTCCCTGAGATCTTGTCCAATACCACTTGTACCAGAAATGCATCTCCTTCGACGACCCTTCCACCCTAGTCCCCCT
CCCCTTACGCTTGCTTGGACCCCGCCCCACCAGCTTTTTTTACACAAGACTACTACTTTACAATCTAATTTGATTGAAAGCTCTCAATCAAATTAGAGAT
CTCCCGCCATATTGGACTTTTTGTTTTTCCAATACAGTCGAGGACTCTTTTAAGATGACTTAAACGGCTCCCATTTGAGGGGAAGCTGTTCAGATCCCCG
AAGTAGGCTTAAATACCTATGTGAATATCGGAATCTTCCTTTATCCGAAGGCGCTAAAGCCCTCTTTATATAAAGAGAGGGCTTTATCAACAATGCTTTC
TATCTTTTTAGAGCATAAGTTGAAATGGCCTTCTGTTAACCGCCACTCCTTTGACGAAATCATATCCTTCAAAATCTTCTTTTCATTTTCTATTTGCTGC
TTGTCGAGAGTTTGGAAAATCTCATCTTGAGATATTTAGCTTTCGACCACGGGAAAAGAAGCTGAAATAGTAGGAGTTTACCTTATAGCAGGACACTCGC
CCGTTGACAACTCTTTCTTAGGTTACTAATCGGTGACTTGCTTCGCCCAGGGGAATTCTATACTGTTTCATCCCTGTTGGTTCAGGCCTCCTCTTCCATC
CCGTGTTTTACTTACATT