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Detailed information on CNT30239187


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Brassica oleraceaSetaria viridis30.1839.4290.19367forward
CNT30548493Brassica oleraceaIpomoea triloba26.439.7895.02321reverse complement
CNT30405732Brassica oleraceaBeta vulgaris36.2735.6291.16441forward
CNT30201968Brassica oleraceaPisum sativum44.4167.5893.52540forward
CNT30164425Brassica oleraceaPistacia vera26.1517.1394.03318reverse complement
CNT30181606Brassica oleraceaSecale cereale44.8232.0290.64545forward
CNT30307642Brassica oleraceaTriticum aestivum44.8262.8690.64545forward
CNT30592657Brassica oleraceaMusa acuminata26.07983.91317forward
CNT30544645Brassica oleraceaBrassica napus92.02100.0998.571119forward
CNT30510913Brassica oleraceaSolanum lycopersicum21.9635.8992.88267reverse complement
CNT3061148Brassica oleraceaArabidopsis lyrata8.0639.3683.6798reverse complement
CNT3079706Brassica oleraceaBrassica juncea93.01100.0998.51131forward
CNT30681493Brassica oleraceaTriticum urartu44.8232.5890.64545forward
CNT30596463Brassica oleraceaOryza meridionalis14.8844.6986.74181forward
CNT3058969Brassica oleraceaAmborella trichopoda7.1520.0589.6687forward
CNT30104396Brassica oleraceaOryza rufipogon24.127.2891.47293forward

Expression of CNT30239187

Peptides detected in this lncRNA

>peptide 1 (97 aa)
EGRGGKGFLHPSLCPADHSAGILHSRLRLTAARGCSCRYVSQRGSLAPPVLSFYDMLLLSPYSICHLVISASLRASTSERNGGLHSVTPRSPSERSE*

>peptide 2 (29 aa)
MSPSHLCLTAGQHLRKKRRTSFSDSAIAL*

>peptide 3 (45 aa)
MLSIFLEHKLKWPSVNRHSLDEIISFKIFFSFSICCLSRVWKISS*

>peptide 4 (90 aa)
MSSRMLRSKIRSKIFDLPFPSRHGKERQKSERDDSLRSCPIPLVPEMHLLRRPFHPSPPPLTLAWTPPHQLFLHKTTTLQSNLIGSSQSN*

>peptide 5 (38 aa)
MKSYPSKSSFHFLFAACREFGKSHLEIFSFRPREKKLK*

Sequence

>CNT30239187
GGAAGGACGCGGTGGGAAGGGGTTCCTTCACCCTAGCCTCTGTCCGGCCGATCATTCCGCAGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGG
GGATGTAGTTGTAGATACGTTAGTCAACGTGGGTCGTTGGCTCCACCTGTTCTCTCCTTCTACGACATGCTGTTGCTGTCGCCATATTCCATATGTCACC
TAGTCATCTCTGCCTCACTGCGGGCCAGCACCTCAGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAAGGTAA
AGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATTTCC
AATACTAATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCAAAATTCGAAGTAAAATTTTTGATTTGCCTTTTCCTAGTCGTCATGGGAAAGAAAG
GCAGAAATCTGAAAGAGATGATTCCCTGAGATCTTGTCCAATACCACTTGTACCAGAAATGCATCTCCTTCGACGACCCTTCCACCCTAGCCCTCCTCCC
CTTACGCTTGCTTGGACCCCGCCCCACCAGCTTTTTTTACACAAGACTACTACTTTACAATCTAATTTGATTGGAAGCTCTCAATCAAATTAGAGATCTC
CTGCCATATTGGACTTTTTGTTTTTTCCAATACAGTCGAGGACTCTTTTAAGATGACTTAAACGGCTCCCATTTGAGGGGAAGCTGTTCAGATCCCCGAA
GTAGGCTTAAATACCTATGAGAATATCGGAATCTTCCTTTATCCGAATGCGCTAAAGCCCTCTTTATATAAAGAGAGGGCTTTATCAACAATGCTTTCTA
TCTTTTTAGAGCATAAGTTGAAATGGCCTTCTGTTAACCGCCACTCCTTAGATGAAATCATATCCTTCAAAATCTTCTTTTCATTTTCTATTTGCTGCTT
GTCGAGAGTTTGGAAAATCTCATCTTGAGATATTTAGCTTTCGACCACGGGAAAAGAAGCTGAAATAGTAGGAGTTTACCTTATAGCAGGACACTCGCCC
GTTGACAACTCTTTCTTAGGTTACTAATCGGTGACTTGCTTCGCCCAGGGGAATTCTATACTGTTTCATCCCTGTTGGTTCAGGCCTCCTCTTCCATCCC
GTGTTTTACTTACATT