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Detailed information on CNT3079706


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Brassica junceaSetaria viridis32.4839.4291.01367forward
CNT30548493Brassica junceaIpomoea triloba27.7938.9196.82314reverse complement
CNT30405732Brassica junceaBeta vulgaris37.734.4192.96426forward
CNT30201968Brassica junceaPisum sativum47.1766.7194.56533forward
CNT30164425Brassica junceaPistacia vera27.7916.9295.86314reverse complement
CNT30181606Brassica junceaSecale cereale47.6131.6191.64538forward
CNT30307642Brassica junceaTriticum aestivum47.6162.0591.64538forward
CNT30592657Brassica junceaMusa acuminata27.438.885.16310forward
CNT30544645Brassica junceaBrassica napus94.6995.7199.631070forward
CNT30239187Brassica junceaBrassica oleracea100.0993.0198.671131forward
CNT30510913Brassica junceaSolanum lycopersicum23.6335.8994.76267reverse complement
CNT3061148Brassica junceaArabidopsis lyrata8.6739.3683.6798reverse complement
CNT30681493Brassica junceaTriticum urartu47.6132.1691.64538forward
CNT30596463Brassica junceaOryza meridionalis16.0244.6986.74181forward
CNT3058969Brassica junceaAmborella trichopoda7.720.0589.6687forward
CNT30104396Brassica junceaOryza rufipogon25.9327.2893.17293forward

Expression of CNT3079706

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLSHLCLAAGQHLRKKRRTSFSDSAIAL*

>peptide 2 (85 aa)
LCPADHSAGILHSRLRLTAARGCSCRYVSQRGSLAPPVLSFYDMLLLSPYSICHLVISASLRVSTSERNGGLHSVTPRSPSERSE*

>peptide 3 (81 aa)
MSSRMLRSKIRSKIFDLPFPSRHGKERQKSERDDSLRSCPIPLVPEMHLLRRPFHPSPPPLTLAWTPPHQLFFTQDYYFTI*

>peptide 4 (45 aa)
MLSIFLEHKLKWPSVNRHSLDEIISFKIFFSFSICCLSRVWKISS*

>peptide 5 (38 aa)
MKSYPSKSSFHFLFAACREFGKSHLEIFSFRPREKKLK*

Sequence

>CNT3079706
CTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGGATGTAGTTGTAGATACGTTAGTCAACGTGGGTCGT
TGGCTCCACCTGTTCTCTCCTTCTACGACATGCTGTTGTTGTCGCCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGTCAGCACCTCCGA
AAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCA
GTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATTTCCAATACTAATCGTGAAACACCATGAGCAGCAGGATGTT
GAGGTCCAAAATTCGAAGTAAAATTTTTGATTTGCCTTTTCCTAGTCGTCATGGGAAAGAAAGGCAGAAATCTGAAAGAGATGATTCCCTGAGATCTTGT
CCAATACCACTTGTACCAGAAATGCATCTCCTTCGACGACCCTTCCACCCTAGTCCCCCTCCCCTTACGCTTGCTTGGACCCCGCCCCACCAGCTTTTTT
TTACACAGGACTACTACTTTACAATCTAATTTGATTGAAAGCTCTCAATCAAATTAGAGATCTCCCGCCATATTGGACTTTTTGTTTTTCCAATACAGTC
GAGGACTCTTTTAAGATGACTTAAACGGCTCCCATTTGAGGGGAAGCTGTTCAGATCCCCGAAGTAGGCTTAAATACCTATGTGAATATCGGAATCTTCC
TTTATCCGAAGGCGCTAAAGCCCTCTTTATATAAAGAGAGGGCTTTATCAACAATGCTTTCTATCTTTTTAGAGCATAAGTTGAAATGGCCTTCTGTTAA
CCGCCACTCCTTAGATGAAATCATATCCTTCAAAATCTTCTTTTCATTTTCTATTTGCTGCTTGTCGAGAGTTTGGAAAATCTCATCTTGAGATATTTAG
CTTTCGACCACGGGAAAAGAAGCTGAAATAGTAGGAGTTTACCTTATAGCAGGACACTCGCCCGTTGACAACTCTTTCTTAGGTTACTAATCGGTGACTT
GCTTCGCCCAGGGGAATTCTATACTGTTTC