Detailed information on CNT3058969


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Amborella trichopodaSetaria viridis28.1113.186.89122forward
CNT30224633Amborella trichopodaHordeum vulgare19.5923.189.4185forward
CNT30544645Amborella trichopodaBrassica napus20.057.7889.6687forward
CNT30239187Amborella trichopodaBrassica oleracea20.057.1589.6687forward
CNT3079706Amborella trichopodaBrassica juncea20.057.789.6687forward
CNT30681367Amborella trichopodaTriticum urartu19.5922.4989.4185reverse complement
CNT30596463Amborella trichopodaOryza meridionalis28.3430.3786.18123forward

Expression of CNT3058969

Peptides detected in this lncRNA

>peptide 1 (51 aa)
SWERKAEIRKRFFPESLSSTTSTTNASPSPARDSSTWLPLSRLACKRYWRQ*

>peptide 2 (45 aa)
MQSVSALFQREGSWRPGTVTQLHLLACERLICRRLCYERKRAKLS*

>peptide 3 (33 aa)
MHLLRPRAIALPGCRLAALHASAIGGNSSLSDD*

>peptide 4 (39 aa)
MIDAVSQCPVPERRIMAPRNRDAAASPCVRETYMPPALL*

Sequence

>CNT3058969
TCATGGGAAAGAAAGGCAGAAATAAGAAAGAGATTCTTCCCTGAGAGCTTGTCCAGTACCACCAGTACCACAAATGCATCTCCTTCGCCCGCGCGCGATA
GCTCTACCTGGCTGCCGCTTAGCCGCCTTGCATGCAAGCGCTATTGGCGGCAATAGCTCACTGAGCGATGATTGATGCAGTCAGTCAGTGCCCTGTTCCA
GAGAGAAGGATCATGGCGCCCCGGAACCGTGACGCAGCTGCATCTCCTTGCGTGCGAGAGACTTATATGCCGCCGGCTCTGTTATGAAAGAAAGCGGGCT
AAGCTTAGCTAATAAGTAGCAAAAGAAGCTAGCTTATAAGCTTGCTTCGCTTCTTAGCCAACCCAACCAACCACTTGGTACCAAGCGCTTAGCTGTTGCG
CTTTCGTAGAAGAGGGCGTCTACATCAGTACCTA