« Back to Triticum aestivum search


Detailed information on CNT30307642


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 1e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Triticum aestivumSetaria viridis72.7867.7897.62631forward
CNT30201968Triticum aestivumPisum sativum69.0974.9793.49599forward
CNT30221243Triticum aestivumHordeum vulgare55.9422.5197.73485forward
CNT30544645Triticum aestivumBrassica napus55.1342.7590.79478forward
CNT30239187Triticum aestivumBrassica oleracea62.8644.8290.64545forward
CNT30510913Triticum aestivumSolanum lycopersicum31.2636.4291.51271reverse complement
CNT3079706Triticum aestivumBrassica juncea62.0547.6191.64538forward
CNT30596463Triticum aestivumOryza meridionalis47.29101.2397.56410forward
CNT30104396Triticum aestivumOryza rufipogon33.7927.2899.32293forward

Expression of CNT30307642

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRKK*

>peptide 2 (66 aa)
VHSLCISDTQGRTRWEESCPSLCPVDHSAGILHSRLRLTAARECSCRYVSLSGSLAPPLISFYDML*

>peptide 3 (38 aa)
RCTRFVSPTHKEGRGGKKAALASVRSIIPLASCIHASV*

>peptide 4 (58 aa)
MQSVSALDYSIPDRRIMAPRKHSIQQQHLLQPREDKTDVSYIRAFTAQRRSRTLPMIIN

Sequence

>CNT30307642
CGGTGCACTCGCTTTGTATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCTGCCCTAGCCTCTGTCCGGTCGATCATTCCGCTGGCATCTTGCA
TTCACGCCTCCGTTTGACTGCCGCTCGGGAATGTAGTTGTAGATACGTGAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTACGACATGCTG
TAGTCGTCGCCATATTCAATATGTCACTTAGTCATATCTGCCTCGCAGCGGGTCAGCACCTCCGAAAGAAAGGGAGGGAGGACTTCATTCAGTGACTCCG
CGATCGCCCTCTAAACGATCAAAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCGATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTT
CCGCACGTTCCACCACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGAT
TTGCCCGTTCCTAGTCGTCATGGGAAAGAAATAAGAAAGAAATAAGAAAGAGATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATC
TCCGCGCGTCTACCTGGCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAGCGATGATTGATGCAGTCAG
TCAGTGCCCTCGATTATTCTATTCCTGATAGAAGGATCATGGCGCCCCGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAAC
TGATGTTAGCTACATTCGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAAT