Detailed information on CNT3061148


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156864Arabidopsis lyrataPistacia vera55.829.4589.93139reverse complement
CNT30544645Arabidopsis lyrataBrassica napus39.368.7783.6798reverse complement
CNT30239187Arabidopsis lyrataBrassica oleracea39.368.0683.6798reverse complement
CNT3079706Arabidopsis lyrataBrassica juncea39.368.6783.6798reverse complement
CNT30103326Arabidopsis lyrataOryza rufipogon68.2720.0587.06170forward

Expression of CNT3061148

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MCLPEPGGLRACCVRLASLAAAKGIKEDSDIRIGIEAGI*

Sequence

>CNT3061148
GCCGCCGTTTCTAGGACCGACCGACGCCTCACCTGCACTGGTACCTACGTAGTGTCGGTCGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGA
ACCAGGGGGTCTTCGAGCATGCTGCGTACGATTAGCCAGCCTTGCGGCGGCAAAAGGAATAAAGGAAGATTCCGATATTCGCATAGGTATTGAAGCGGGG
ATCTGAACAGCTAGCTTCCCCTCAAATGGGAGCCTTGTAAGTAATCTTA