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Detailed information on CNT30596463


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 1e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Oryza meridionalisSetaria viridis10043.597.28405forward
CNT30405732Oryza meridionalisBeta vulgaris206.5495.0681forward
CNT30201968Oryza meridionalisPisum sativum44.6922.6590.61181forward
CNT30194250Oryza meridionalisSecale cereale101.2315.3397.32410forward
CNT30307642Oryza meridionalisTriticum aestivum101.2347.2997.56410forward
CNT30221243Oryza meridionalisHordeum vulgare101.2319.0395.61410forward
CNT30544645Oryza meridionalisBrassica napus44.6916.1986.74181forward
CNT30239187Oryza meridionalisBrassica oleracea44.6914.8886.74181forward
CNT3079706Oryza meridionalisBrassica juncea44.6916.0286.74181forward
CNT30685567Oryza meridionalisTriticum urartu101.2362.697.32410forward
CNT30371428Oryza meridionalisOryza glumipatula2012.9698.7781forward
CNT3058969Oryza meridionalisAmborella trichopoda30.3728.3486.18123forward
CNT30103440Oryza meridionalisOryza rufipogon28.897.2299.15117forward

Expression of CNT30596463

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRKK*

>peptide 2 (30 aa)
MAPRNGSIPSSSSISFNHARTKLMLATFERS

>peptide 3 (39 aa)
MIDAVSQCPRLFLIEGSWRPGTEAFHPAAASPSTTRGQN*

Sequence

>CNT30596463
GTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATG
GGAAAGAAATAAGAAAGAAATAAGAAAGAGATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTGGCGCTT
TTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAGCGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTG
ATAGAAGGATCATGGCGCCCCGGAACGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCTACATTCGAGCG
TTCAC