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Detailed information on CNT30675027


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201968Setaria viridisPisum sativum39.4245.9392.37367forward
CNT30194250Setaria viridisSecale cereale101.2935.2596.71943forward
CNT30307642Setaria viridisTriticum aestivum67.7872.7897.62631forward
CNT30221243Setaria viridisHordeum vulgare85.6136.9894.98797forward
CNT30544645Setaria viridisBrassica napus39.4232.8391.01367forward
CNT30239187Setaria viridisBrassica oleracea39.4230.1890.19367forward
CNT3079706Setaria viridisBrassica juncea39.4232.4891.01367forward
CNT30681493Setaria viridisTriticum urartu78.9543.9397.55735forward
CNT30596463Setaria viridisOryza meridionalis43.510097.28405forward
CNT3058969Setaria viridisAmborella trichopoda13.128.1186.89122forward
CNT30104408Setaria viridisOryza rufipogon32.0161.1995.64298forward

Expression of CNT30675027

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MIDAVSQCPRLFQIEGSWRPGSIPSSSSISFNHARTKLIYIRAFTAQRRSRTLPMIINPKERSIK*

>peptide 2 (40 aa)
MALLCIGRTKPIANNKLFPAPSTLIHSHPVKPQLPAHCIY*

>peptide 3 (59 aa)
MAPRKHSIQQQHLLQPREDKTDLHSSVHRTEAISNTTYDNKSKGKVDKMIQSDFIGILD*

>peptide 4 (30 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRKK*

Sequence

>CNT30675027
TCTGCCTCGCTGCGGGTCAGCACCCCCGAAAGAAAGGGAGGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATAAAAATAAGGTAAAGCT
TGAAGATAAGTTTTGTACTCGATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATTTCCAATA
CTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGGGAAAGAAATAAGA
AAGAAATAAGAAAGAGATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTGGCGCTTTTATTAGCCGCCTT
GCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAGCGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCAGATAGAAGGATCATG
GCGCCCCGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATCTACATTCGAGCGTTCACCGCACAGAGGCGATCTCGA
ACACTACCTATGATAATAAATCCAAAGGAAAGGTCGATAAAATGATTCAATCTGACTTTATTGGTATTCTGGATTGAGTAAAAAAAGGGATATATGAAGT
TCAAGGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAACAAACTCTTTCCTGCTCCCTCGACCTTAATTCAC
TCCCATCCTGTCAAGCCTCAGCTGCCAGCGCATTGTATCTATTGAAATGTGGCAAATTGATACAAGTAGCTAAAGATCTCGCATCCGACATCTCCGGCCG
AACGGTTAGGCAACACTAGGGCGCCTGGGTT