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Detailed information on CNT30548493


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Ipomoea trilobaSetaria viridis33.716.6894.49272reverse complement
CNT30405728Ipomoea trilobaBeta vulgaris65.846.9991.9531forward
CNT30201968Ipomoea trilobaPisum sativum46.4746.9396.8375reverse complement
CNT30164425Ipomoea trilobaPistacia vera84.0136.5391.74678forward
CNT30181606Ipomoea trilobaSecale cereale58.2427.6193.4470reverse complement
CNT30297416Ipomoea trilobaTriticum aestivum58.2434.0392.98470reverse complement
CNT30592657Ipomoea trilobaMusa acuminata57.513.1784.7464reverse complement
CNT30544645Ipomoea trilobaBrassica napus31.4722.7296.85254reverse complement
CNT30239187Ipomoea trilobaBrassica oleracea39.7826.495.02321reverse complement
CNT30510913Ipomoea trilobaSolanum lycopersicum47.5851.6192.97384forward
CNT3079706Ipomoea trilobaBrassica juncea38.9127.7996.82314reverse complement
CNT30681493Ipomoea trilobaTriticum urartu58.2428.0993.4470reverse complement
CNT3038524Ipomoea trilobaCucumis melo21.0717.9985.29170forward
CNT30104396Ipomoea trilobaOryza rufipogon61.5946.2889.94497reverse complement

Expression of CNT30548493

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNVGLGHLEWHEPHAGRPARTVLRGIWSKNRPAPTRLEGLRN*

>peptide 2 (49 aa)
QGRPGHLMEMEGFSLLEKALWSKGKCMNSWKKSSEPIYINRKCTNSMNR*

>peptide 3 (61 aa)
MRDASGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTGPIYSMAKHPKHNCTLKRSLSRD

Sequence

>CNT30548493
GCCAGGGGAGGCCGGGTCATTTGATGGAAATGGAAGGCTTTTCCCTATTAGAGAAGGCCCTATGGAGTAAAGGGAAGTGCATGAATTCTTGGAAAAAGAG
CTCGGAGCCTATATATATAAATCGAAAATGCACAAATTCAATGAATAGATAGAGTCAACGGTACGACAGACAGCGCTGCCTACACGCAAATTAGCTTCCG
AGATTGAGCAGTATAAATTTAACTACAGGATTTGCATATGAATGTTGGGCTAGGCCACCTCGAATGGCATGAGCCGCATGCAGGGAGACCCGCACGTACG
GTTTTAAGGGGGATCTGGTCGAAAAACCGGCCAGCACCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTA
TTCTGATCGTTCAGAGGGCGATCGCGGGGTCACTGAATGAAGTCCTCCGTTTCTTTCGGAGGTGCTGACCCGCAGCGAGGCAGAGATGACTAAGTGACAT
ATGGAATATGGCGACGACAACAGCATGTCGTAGAAGGAGATAACAAGTGGAGCCAACGACCCACTAAGACTAACCTATCTACAACTACATCCCCGAGCGG
CAGTCAAACGGGGGCGTGAATGCGAGATGCCAGCGGAATGATCGGCCGGACAGAGGCTAGGGCTGCTTCCTTCCCACCGCGTCCTTCCTTGTGTGTCGGA
GATATAAAGCGAGTGCACCGGAAAAGAACGGGAACTGGGCCGATCTATTCTATGGCGAAGCATCCGAAGCATAACTGCACACTCAAACGATCTTTGTCGA
GAGATAG