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Detailed information on CNT30201968


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Pisum sativumSetaria viridis45.9339.4292.37367forward
CNT30548493Pisum sativumIpomoea triloba46.9346.4796.8375reverse complement
CNT30405732Pisum sativumBeta vulgaris62.0840.0692.34496forward
CNT30164425Pisum sativumPistacia vera46.9320.294.93375reverse complement
CNT30181606Pisum sativumSecale cereale74.9735.1993.49599forward
CNT30307642Pisum sativumTriticum aestivum74.9769.0993.49599forward
CNT30221243Pisum sativumHordeum vulgare25.789.5692.23206forward
CNT30592657Pisum sativumMusa acuminata41.189.3487.23329forward
CNT30544645Pisum sativumBrassica napus59.242.3193.87473forward
CNT30239187Pisum sativumBrassica oleracea67.5844.4193.52540forward
CNT30510913Pisum sativumSolanum lycopersicum33.4235.8994.01267reverse complement
CNT3079706Pisum sativumBrassica juncea66.7147.1794.56533forward
CNT30681493Pisum sativumTriticum urartu74.9735.893.49599forward
CNT30596463Pisum sativumOryza meridionalis22.6544.6990.61181forward
CNT30104396Pisum sativumOryza rufipogon36.6727.2893.17293forward

Expression of CNT30201968

Peptides detected in this lncRNA

>peptide 1 (74 aa)
HSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAARGWSCRYVSLSGSLAPPVISFYDCCCRRHIQYVT*

>peptide 2 (60 aa)
MGKKEEIRKILFPKSLSSTTCTRNASPCVRETSMPAAGSVMXVIYSLPSGLHCERKRIIC*

>peptide 3 (36 aa)
TRFISPTHKEGRGGKEAALASVRPIIPLASCIHASV*

>peptide 4 (35 aa)
MSSRMLRSEIRSEIFYLPVPSRHGKKGRNKKDIIP*

>peptide 5 (29 aa)
MSLSHLCLAAGQHLRKKRRTPFSDSAIAL*

Sequence

>CNT30201968
GCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCA
CGCCTCCGTTTGACTGCCGCTCGGGGATGGAGTTGTAGATACGTTAGTCTTAGCGGATCGTTGGCTCCACCTGTTATCTCCTTCTACGACTGCTGTTGTC
GTCGCCATATTCAATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGTCAGCACCTCCGAAAGAAACGGAGGACTCCATTCAGTGACTCCGCGATCGCCC
TCTAAACGATCAGAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGCACGTT
CCACCACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGAAATTCGAAGTGAAATTTTTTATTTGCCCGTT
CCTAGTCGTCATGGGAAAAAAGGAAGAAATAAGAAAGATATTATTCCCTAAGAGCTTGTCCAGTACTACCTGTACCAGAAATGCATCTCCTTGCGTGCGA
GAGACTTCTATGCCAGCCGCCGGCTCTGTTATGAANGTTATATATAGTTTGCCATCGGGACTTCACTGCGAGAGAAAGAGGATAATTTGTTGAAACTCTT
GACTTTGTAGACCTAATTCAGTAAGATTCTTCAAAATGGTCAAGAGTTGCTCCAAAGACTCGGAATCGTGATGAAGGTGGGTTGCAATATATACATTTC