« Back to Beta vulgaris search


Detailed information on CNT30405732


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Beta vulgarisSetaria viridis39.7412.0988.82492forward
CNT30619472Beta vulgarisSesamum indicum27.7153.5989.5343reverse complement
CNT30201968Beta vulgarisPisum sativum40.0662.0892.34496forward
CNT30181606Beta vulgarisSecale cereale65.4347.5989.38810forward
CNT30297416Beta vulgarisTriticum aestivum57.1151.1988.68707forward
CNT30592657Beta vulgarisMusa acuminata50.7317.8382.17628forward
CNT30544645Beta vulgarisBrassica napus30.2133.4593.05374forward
CNT30239187Beta vulgarisBrassica oleracea35.6236.2791.16441forward
CNT30554303Beta vulgarisOryza glaberrima4.8527.5293.3360forward
CNT3079706Beta vulgarisBrassica juncea34.4137.792.96426forward
CNT30681493Beta vulgarisTriticum urartu65.4348.4289.26810forward
CNT30596463Beta vulgarisOryza meridionalis6.542095.0681forward
CNT3038653Beta vulgarisCucumis melo19.3124.0791.21239forward
CNT30726873Beta vulgarisLupinus angustifolius20.681.7389.8255forward

Expression of CNT30405732

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMLSLPYSICHLVISASLRVSISERNGGFH*

>peptide 2 (29 aa)
MSLSHLCFAAGQHLRKKRRISLSDSAIAL*

>peptide 3 (98 aa)
MRTSFPSDHAPFIRFSKQRRTGEQEVPRALCPTHISKSKCSSPVSPNALISRQRSCECAIMLWMLRHRIDRVSSRSFPVHSLYISDTQGKMRWGRKHP*

>peptide 4 (32 aa)
MSSRMLRSEIQSEIFDLSVYWKESQNKKEIIP*

Sequence

>CNT30405732
CGCAATTCAAAAGTCTCTCTACAGCTGAAGAATGAGCGTGTTCTTGGGCCATCATAGAAACATAGATAGGGTCGACGACGGAACGAAGAACTCACCCTAG
ATACAACTTTTACATACATGTTCACTTGCATCACATACACAAGTGTTCTCTGAATCGTGCAATAAGGTCACCCATAACACGGCTCTCCTACTTGAGTTAC
CTTACCCCAGGCCATGCTATTCAATGATATTGTAAAAATGACAGCATAACCTAACAACTAGTATGGAAAACGGGTCTCCCTTTGATTGAGGGAGGTTGAC
GTCTAGTCAATAGGAGCCGTACTTTCCAATCACTAAGAAAAAAGAAAATCACTATCTAAGTCAAGTCTTGTCTGTTATTTTTCTGGCCCCAAGGGATTTT
ACTCAACCCATTTCCTAGTCTCTCGCACTGCTCAAGTAAGTGTGCAACTCCATATGAGGACCTCCTTCCCTTCTGACCACGCTCCGTTCATACGGTTCTC
AAAGCAGAGGAGGACGGGTGAGCAGGAGGTACCACGAGCCCTCTGCCCCACACATATATCCAAAAGCAAGTGTAGTTCACCGGTTTCACCAAATGCTCTT
ATCTCTCGGCAAAGATCGTGTGAGTGTGCAATTATGCTTTGGATGCTTCGCCATAGAATAGATCGAGTCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTT
ATATCTCTGACACACAAGGAAAGATGCGGTGGGGAAGAAAGCATCCCTAGCCTCTATTTGGCCGATCATTCCGCTGGCATCTCGCATTCACGCCCTCGTT
TGACTGCTGCTCGGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTATGACATGATGTTGTCGTTGCCATA
TTCTATATGTCACTTAGTCATCTCTGCTTCGCTGCGGGTCAGCATCTCCGAAAGAAACGGAGGATTTCATTAAGTGACTCTGCGATCGCCCTCTAAACGA
TCAAAATAAGGTAAAGCGTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTTGGTAATCCAATATGTGGTTCTGCACGTATCACCACTT
CTCCGTTCATTTCCAATACTAATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGAAATTCAAAGTGAAATTTTTGATTTGTCTGTTTATTGGAAA
GAGTCCCAAAATAAGAAAGAGATTATTCCCTAAGAGCT