Detailed information on CNT30104396


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548493Oryza rufipogonIpomoea triloba46.2861.5989.94497reverse complement
CNT30405728Oryza rufipogonBeta vulgaris33.3331.6889.11358reverse complement
CNT30201968Oryza rufipogonPisum sativum27.2836.6793.17293forward
CNT30164425Oryza rufipogonPistacia vera46.5526.9489.2500reverse complement
CNT30193415Oryza rufipogonSecale cereale52.42100.1897.87563reverse complement
CNT30307642Oryza rufipogonTriticum aestivum27.2833.7999.32293forward
CNT30221243Oryza rufipogonHordeum vulgare66.5733.1897.48715forward
CNT30544645Oryza rufipogonBrassica napus24.0223.0892.25258forward
CNT30239187Oryza rufipogonBrassica oleracea27.2824.191.47293forward
CNT30510913Oryza rufipogonSolanum lycopersicum36.1352.1587.37388reverse complement
CNT30171099Oryza rufipogonTrifolium pratense13.6925.380.27147forward
CNT3079706Oryza rufipogonBrassica juncea27.2825.9393.17293forward
CNT30371226Oryza rufipogonOryza glumipatula26.5410094.74285forward
CNT3038524Oryza rufipogonCucumis melo50.9357.8884.46547reverse complement
CNT30578338Oryza rufipogonOryza barthii26.5478.394.04285forward
CNT30333557Oryza rufipogonCynara cardunculus10.0624.2282.41108reverse complement

Expression of CNT30104396

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ILHSRLRLTAARECSCRYVSLSGSLAPPLISFYDML*

>peptide 2 (81 aa)
MSRSDLPFPSNDPASPGSSTVRAPFPPYAPPAQAHHASRLRRFRQTVFASSAILPAGCLYGWVVPCCYVLLGAMNYRKLSG*

>peptide 3 (33 aa)
MITPGYALAPLTGTPGSAYARENPGWSSDQMCG*

>peptide 4 (60 aa)
MTRLPLALPPSGLPFLPMLPRRRPTTLRACGVFARRSLPVVPSSPQAVCMGGLSLAATFC*

Sequence

>CNT30104396
GCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGAATGTAGTTGTAGATACGTGAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTA
CGACATGCTGTAGTCGTCGCCATATTCAATATGTCACTTAGTCATATCTGCCTTGCAGCGGGTCAGCACCTCCGAAAGAAAGGGAGGGAGGACTTCATTC
AGTGACTCCGCGATCGCCCTCTGAACGATCAAAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCGATTAATTTCTCAGTCCCTCTAGTCGGGTGGGCG
CCGGCCGGCCGGATCCCCCTGAAAACCGTACGTGCGGGTCTCCCCGCATGCGGCTCACGCCATTTGAGGTGGCCCAGCCTAGCATTCATTCGCAAATCCT
GTAGTGAAATTGAGACTGCTCGACCTCGGAAGCTAATTCGCGTGTAGGTGGCGCTGTCTGTCTACCGTTGACTGTATCTATTCATTGATACATTGGCTCG
CCCCCCCCCTCTTTTTCCAAGAATGAATGAGCCGCTCGGACCTTCCATTTCCGTCAAATGACCCGGCTTCCCCTGGCTCTTCCACCGTCCGGGCTCCCTT
TCCTCCCTATGCTCCCCCGGCGCAGGCCCACCACGCTTCGCGCCTGCGGCGTTTTCGCCAGACGGTCTTTGCCAGTAGTGCCATCCTCCCCGCAGGCTGT
CTGTATGGGTGGGTTGTCCCTTGCTGCTACGTTCTGTTAGGCGCTATGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCC
ACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGACGGGCACTCCAGGATCCGCCTACGCTCGTGAAAACC
CAGGTTGGTCCTCCGACCAGATGTGTGGATAACGAGGCCACCTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGT
CGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAGCGGCATAGGAGCCTA