Detailed information on CNT3043744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Prunus dulcisJuglans regia89.860.1784.38352forward
CNT30698380Prunus dulcisQuercus lobata72.1971.6583.75283forward
CNT30728129Prunus dulcisCorchorus capsularis44.1329.1283.82173forward
CNT30381636Prunus dulcisManihot esculenta30.3617.8988.24119forward
CNT30708069Prunus dulcisGlycine max19.6423.9985.7177forward
CNT30565212Prunus dulcisActinidia chinensis38.7818.4783.55152forward
CNT30651738Prunus dulcisRosa chinensis98.9871.9987.11388forward
CNT30126429Prunus dulcisCorymbia citriodora55.6142.6680.73218forward
CNT30569875Prunus dulcisVitis vinifera20.669.8583.9581forward

Expression of CNT3043744

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SPIMLLLASDTLDDEDIKDDVSFFASRFIND*

>peptide 2 (78 aa)
MMKILKMMYPSLLHVSSMTDKIQPAQEHGALYQHCLPPLAGFLVEEVDEVVHQVGVAAVVVLHLRVWELYQQEHLQML*

Sequence

>CNT3043744
CTCCCCAATCATGTTGCTCCTCGCATCAGATACATTAGATGATGAAGATATTAAAGATGATGTATCCTTCTTTGCTTCACGTTTCATCAATGACTGATAA
AATTCAACCAGCTCAGGAGCACGGTGCACTTTATCAGCACTGCCTGCCCCCCTTGGCAGGATTCCTGGTGGAGGAGGTGGACGAGGTGGTCCACCAGGTG
GGGGTGGCGGCGGTGGTGGTACTCCACTTGAGGGTTTGGGAGTTGTACCAGCAGGAGCACCTCCAGATGCTTTAGGAGGCGGCCGAGGTACCCTAGGAGG
CCTCTTCTCAATTTGGGCAAGTTTCATCTTGGTTATTGCTTGAGAATCAACAGCGTTACCATCGTTAGTTTGGTTGCTTGAATCACCCAAAA