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Detailed information on CNT30126429


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Corymbia citriodoraJuglans regia41.4936.2481.13212forward
CNT30698337Corymbia citriodoraQuercus lobata39.5342.8982.67202forward
CNT30728130Corymbia citriodoraCorchorus capsularis22.719.981.03116forward
CNT30488696Corymbia citriodoraOlea europaea39.7335.3783.25203forward
CNT3043744Corymbia citriodoraPrunus dulcis42.6655.6180.73218forward
CNT30565212Corymbia citriodoraActinidia chinensis27.0116.7780.43138forward
CNT30651738Corymbia citriodoraRosa chinensis28.7727.2784.35147forward
CNT30717384Corymbia citriodoraMalus domestica golden40.929.4481.34209forward
CNT3029382Corymbia citriodoraTheobroma cacao40.3136.0881.07206forward
CNT3024994Corymbia citriodoraPopulus trichocarpa42.0735.3684.19215forward
CNT30328600Corymbia citriodoraAsparagus officinalis12.9222.1586.3666forward
CNT30120386Corymbia citriodoraCitrus clementina42.6633.2383.49218forward
CNT3038944Corymbia citriodoraCucumis melo15.2620.3788.4678forward

Expression of CNT30126429

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPGKGGGIGGGRGVLGGLFSMCANFILLTV*

>peptide 2 (32 aa)
MKYPSLPHVSSVSDRTPLVQEPDEPSHRFLLL*

>peptide 3 (42 aa)
TAKRNVDLFSISPIILLLASDTFAVEEIRDEVSFFASRFISV*

>peptide 4 (71 aa)
MNLLTASCSSRKTAWWRGWTRWPTRWWRRRRWHAWQGWRHRWWTRCPWRPLLNVCKLHSTHCLRIICLSIT*

Sequence

>CNT30126429
ACGGCTAAAAGGAATGTTGATCTATTCTCTATTTCCCCAATCATATTGCTCCTAGCATCTGACACATTTGCTGTAGAAGAAATCAGAGATGAAGTATCCT
TCTTTGCCTCACGTTTCATCAGTGTCTGATAGAACTCCACTAGTTCAGGAGCCCGATGAACCTTCTCACCGCTTCCTGCTCCTCTAGGAAGACTGCCTGG
TGGAGGGGGTGGACGAGGTGGCCCACCCGGTGGTGGCGGAGGCGGCGGTGGCATGCCTGGCAAGGGTGGAGGCATAGGTGGTGGACGAGGTGTCCTTGGA
GGCCTCTTCTCAATGTGTGCAAACTTCATTCTACTCACTGTTTGAGGATCATCTGCCTTAGCATCACCTGACTGGCCTCCTGAACCTTGTGAAACAACTA
CTTTCTCCTTTATCAGAGCAAGTTTTGGTGGCAGTGAGATGTTTTTCTCTTTGTCCGACCTGCTCGAGTCATAGTTAATGTTGAAACTCCTATCACCAAA
CTTCTGAGCTC