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Detailed information on CNT30717384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Malus domestica goldenJuglans regia20.9925.4787.25149forward
CNT30650923Malus domestica goldenRosa chinensis66.261.283.62470forward
CNT30126429Malus domestica goldenCorymbia citriodora18.0325.0583.59128forward

Expression of CNT30717384

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MMKILKTMYPSLLHVSSMTDRIQPAQERGVLYHHHLPP*

>peptide 2 (35 aa)
LFSISPIILLLASDTLDDEDIKDDVSFFASRFIND*

Sequence

>CNT30717384
TTTGTTCTCAATCTCCCCAATCATATTGCTCCTCGCATCGGATACATTAGATGATGAAGATATTAAAGACGATGTATCCTTCTTTGCTTCACGTTTCATC
AATGACTGATAGAATTCAACCAGCTCAGGAGCGCGGTGTACTTTATCACCACCACTTGCCCCCTTAGGCAGGCTTCCTGGTGGAGGTGGTGGACGAGGTG
GTCCACCAGGTGGAGGAGGTGGTACTCCACTTGGGGGACCGGGAGTTGTACCAACAGGGGCACCTCCAGATGCCTTAGGAGGCGGGCGAGGTACCCGAGG
AGGCCTTTTCTCAATTTGGGCAAGTTTCATCTTGGTTATTACTTGAGGATCAACAGCATTACCATCGGCGTTACCATCATTACTTTGGTTGCTTGAATTG
CCAGAAATAACTGCCTTTTCCTTGATATGGGCAAGTTTTGGTGGTAAAGCTACTGATCTCTCCTTTTCAGCCTTGGCTCTAGGCTCGTAGCTCAAACTTA
CACTTGATTTGTCGCCAAACTTCTCTACCCTTGCTTGCTCTGCCCTTTCCTTAATTTGCTTCTCTCTCTCTAAGGCCAACCTATGCCGGTCTTTGTAAGC
AGGATATTTCTCATCTAGAACTCCTTCAACTGACTTCGACATCAACTGGAAAGATGATGCCACAGAATTAGGTGAGTCGCTAGAAGACATCTGTGTTCTA
ATGTTCGGAA