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Detailed information on CNT30415484


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Papaver somniferumJuglans regia21.122083.76117forward
CNT30708069Papaver somniferumGlycine max13.923.9985.7177forward
CNT3043735Papaver somniferumPrunus dulcis13.5420.4985.3375forward
CNT3038944Papaver somniferumCucumis melo14.0820.3784.6278forward

Expression of CNT30415484

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MWYPSLPHVSLNSDRIPLARELGELYHQSLALLTNFQVEEVFHLEN*

>peptide 2 (34 aa)
FSISPIILLRALAVLDVEEVTNVVSFFASRFIKL*

Sequence

>CNT30415484
TTCTCGATCTCCCCGATCATATTGCTCCGAGCACTGGCTGTATTGGATGTTGAAGAAGTAACTAATGTGGTATCCTTCTTTGCCTCACGTTTCATTAAAC
TCTGATAGAATTCCACTAGCTCGGGAGCTCGGTGAACTTTATCACCAGTCCCTGGCCCTTTTGACAAACTTCCAGGTGGAGGAGGTATTCCACCTGGAGA
ATTAGCATTTGCAACAGCAGCACCAGGACCACCACCGGATGATTTAGGAGGCGGCCTAGGCACCCTTGGAGGCCTTTTTTCAATATCGGCATACTTTATC
TTGCTCACAACTTGGGATGCAACTTCAGTAGCATCATTATTTGTTTGTTCACCTGAACCACCAGTTACAACGACTTTCTCCTTTATTTTGGCAAGTTTCG
GCGGCAAGATTGCAGGCTTCCTATCACCCACCTTTCCTTGTGAATCAGGGCTTGAATAAACACCAGTGAATCTTTCTGTTCTTGCTTGCTCGGCTTTCTC
CTTGATTGCCTTCTCCCTCTCTAACGCCAACTTGTGTCGATCCTTATAAGCAGG