CANTATAdb - search

Detailed information on CNT30653584

BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3042661	Rosa chinensis	Prunus dulcis	18.87	48.47	86.71	143	forward
CNT30143926	Rosa chinensis	Medicago truncatula	9.76	21.14	85.14	74	forward
CNT3017206	Rosa chinensis	Zea mays	11.61	30.03	85.23	88	forward
CNT3067329	Rosa chinensis	Leersia perrieri	11.87	35.43	86.67	90	forward
CNT30704364	Rosa chinensis	Prunus avium	32.85	10.88	85.54	249	forward
CNT3025942	Rosa chinensis	Populus trichocarpa	12.66	29	84.38	96	forward

Expression of CNT30653584

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MVITAGVALGAGEVVVTNLRRFYRRWRRWTRVRGILSYLDGVRSLHCNSTFPGCGVTQITLHSDVPCLSPAGTP*

>peptide 2 (33 aa)
QHINRLVYTNRSASDIIHNRPSTSWNLNAGFEE*

>peptide 3 (37 aa)
MGSNCNGHHSRCCSRGRRSSCHKPEEVLSEMEEMDQG*

Sequence

>CNT30653584
GCAACACATAAATAGACTTGTATATACAAATAGATCAGCATCTGACATAATCCATAACAGACCATCCACTTCTTGGAATCTAAACGCTGGATTTGAGGAG
TAAGCTGTACGCTATGCAAAGAAGGAGAACATCACGCAAGCTCTGAGTTTTCTTCCTTCCTCGCTTTCGTTACCACTGTAGAAAGGGCCGAGTGTTTTGC
TTAAGAACTGCTGTGCTTGGCACCACCTCCCAAAGTCCAGTGAGCTTTAGCCGGTGTGCGCTTCAATGACTTCACACTCATTGGATTGCCCTTGCTCTGT
TACAGGCACAAACACAATGTAAGCAAAACATGTACATGAACAAGTAAAAACATTAGCAGTAAATTTTAGTTGATCTGACCAGCTGACAGGTTCCTGCATT
GACATTGCAGACGGGGTAGTCTGATGGGCAGCAACTGTAATGGTCATCACAGCAGGTGTTGCTCTCGGGGCAGGAGAAGTAGTTGTCACAAACCTGAGGA
GGTTTTATCGGAGATGGAGGAGATGGACCAGGGTTAGGGGGATTCTGTCCTACCTTGACGGGGTAAGAAGCCTCCATTGCAATTCCACATTTCCCGGTTG
CGGTGTTACCCAGATTACGCTCCATTCTGATGTACCCTGCCTCTCCCCAGCTGGCACCCCATGAATTCCTCACAATCCAGTAATCAACGCCATGGTCTGT
GCCGTATCCAACAACAGTAACACCATGGTCTAGTGCTGTCCCACACCGTCCAGTAAAC