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Detailed information on CNT3033044


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 3e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548101Theobroma cacaoIpomoea triloba8.8221.7589.5567forward
CNT3042661Theobroma cacaoPrunus dulcis16.3242.0380.65124forward
CNT30559660Theobroma cacaoActinidia chinensis14.0846.1283.18107forward
CNT30462305Theobroma cacaoSaccharum spontaneum11.5821.4686.3688forward
CNT30585367Theobroma cacaoEchinochloa crusgalli11.7130.1783.1589forward

Expression of CNT3033044

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSSSQSNNLYPSLCHIQQQSHHGPVVFHIFHQIYPKEIGRKVDIH*

>peptide 2 (46 aa)
DTAAGIAFRAGVITITNGRRLYRRWRRGTRVGGIFLLRYWPHFAPS*

Sequence

>CNT3033044
AGACACAGCAGCAGGTATTGCTTTCAGGGCAGGTGTAATAACTATCACAAACGGTAGGAGGCTTTATCGGAGATGGAGGAGAGGGACCAGGGTTGGGGGG
ATTTTCCTGTTACGCTATTGGCCTCATTTCGCGCCATCCTAATATAGCCTTCCTCTCCCCAGCTGCTGCCCCATGAGTTCTTCACAATCCAATAATCTTT
ACCCTTCTCTGTGCCATATCCAACAGCAGTCACACCATGGTCCAGTTGTGTTCCACATTTTCCATCAAATATACCCTAAAGAAATTGGAAGAAAAGTAGA
CATACATTAACTCCGCATTTAAGAAGACGTAATTGTTTCATGATAAGTATGAAATTTATTAAATCGTGCTCAGACTTGATAATCTAATCAGAATAATTAG
CAACAAAGCATTCAGGTTCAGCCCGTGGGGATCTAGTTTTTATGGGTGGAAAAAGAGGTGTTTCTTTCTATAGCAAAGGCGGTAACAAATAGTAACATCA
ACTCCACGAGATCGTTTCAGGTTGCATTAATTAATTAAAATCATACGTGATCTCATGATCATCCTAAATCTAAATTATGGTCAGAATAGCAAGTAATGTT
GATGATGCAGAATCTTACTGATTGATATAACTGGAAAGCCCTGCCTCCTGCTTCGATGGCAACACTCACTGGTTGATTTGCAACTGCCTTTTTCAATGCC
GTCTCATCATTTACTGGAACATCTTCATATGCATCGATTGAAACAACCCTGGCATTTTTC