Detailed information on CNT30711290


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 3e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616633Glycine maxSesamum indicum7.3723.8982.4797forward
CNT3042661Glycine maxPrunus dulcis4.6320.6886.8961forward
CNT30586158Glycine maxMusa acuminata6.7621.4585.3989forward
CNT30143968Glycine maxMedicago truncatula11.3944.5188150forward
CNT30608642Glycine maxGossypium raimondii12.4523.7781.71164forward
CNT3067329Glycine maxLeersia perrieri4.0220.8788.6853forward

Expression of CNT30711290

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MINWFSIRCIGNNENKWKREEKNNNSTFGKAIY*

>peptide 2 (36 aa)
MLYRHSLYITLIYPLLSKNHITSCILVRELFQEVQV*

>peptide 3 (36 aa)
MRINGKEKKRIITAHLGRRYINFLKLILLKLGYKRK*

>peptide 4 (35 aa)
MKYEKFTMNCSLLDNYASVILNLPILLLLCNRHTS*

>peptide 5 (33 aa)
MRKFYQYRVNMLWRMTWRISQLARSKSKTTYHT*

>peptide 6 (42 aa)
IIPTPLKVLPNFSLTSLHYLIPILTLLVSLKLCYIDTPYTLH*

Sequence

>CNT30711290
ATTATACCAACACCCCTTAAGGTCTTGCCAAATTTTTCTCTGACATCCCTCCATTATTTAATCCCTATACTAACTCTCCTTGTTTCTTTGAAATTATGTT
ATATCGACACTCCTTATACATTACACTGATATACCCTTTGTTATCCAAGAATCATATTACATCGTGTATTCTTGTAAGAGAGTTGTTTCAAGAGGTGCAA
GTGTAATATGCTCATTCAGAAAGAACTAAGAACTATGCAAATGAACTTAATCATCCACCAATATCTAAAATAATAGCCAATGGTTAGTTCCACATGAAAA
TTCGGTAAGCAGCTAGAAAATATTAGATGGTCTTAGTCATACCTTGAGACAAGTTCCAGCATAAGTGTTGCAGATGGGATAGTCGTTAGGGCAGCAACTG
TAGTGGTCATCACAGCAGGTAGCACCCTCAAGAGGACAGCAACCCCACTCAAAGCAAGCATTTCCGAACTCGAAAATACAGCAACAAGTAGCACTATCAG
CACAGCTGTAGTAGTTGTCACAGACATTTGGTGGCTTCACAGGGGATAAGATGGCTCAATTGCAATTCCACACTTGCCTGATCTGCTGTTAGCAAGATTT
CTTTCTAACCTGATGTAGCCATCTTCTCCCCAGCTAGGACCCCATGAATTCCTTACGATCCAATAATCATGACCATTAGCTGTACCATACCCAACAGCCA
CGACACCATGATCTAGTGCTGTGCCACATCTCCCAGTGAATACACCCTGACAAAAAATGAAATATACTAATGAGAAAATTTTATCAATATAGAGTAAATA
TGCTGTGGAGAATGACTTGGCGGATAAGCCAATTAGCAAGAAGCAAGAGCAAAACTACTTACCACACATGATAAATTGGTTTTCTATCAGGTGTATAGGT
AACAATGAGAATAAATGGAAAAGAGAAGAAAAGAATAATAACAGCACATTTGGGAAGGCGATATATTAATTTTTTAAAATTGATTTTGTTAAAATTGGGT
TATAAAAGAAAGTGATTCATGTTTAGAAACTTTGATCAAAAGCAAGTTTGTGATAAAATTAAACAGAGAATTTATTTACTAACTTCAAATCAAACTTGCT
TGTAGAACAAAACTTGATTTTGAGTTGATGCATTTGCACAATCCAATTTAGCTGCTGCTCTGAACTCACGTTTAAGTGGTGAAAACCCCCTCAAACATGA
AATATGAAAAATTCACAATGAATTGTTCGTTGTTAGATAATTATGCTTCAGTAATTTTGAATCTTCCCATTCTACTTCTTCTATGCAATAGGCACACTTC
CTAGTTTATGAAAGAAA