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Detailed information on CNT30657523


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 1e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Triticum dicoccoidesSetaria viridis21.6825.2494.54183forward
CNT30520701Triticum dicoccoidesSetaria italica23.9336.8695.54202forward
CNT30288773Triticum dicoccoidesTriticum aestivum20.7366.79100175forward
CNT30386161Triticum dicoccoidesTriticum turgidum43.660.53100368forward
CNT30555842Triticum dicoccoidesOryza glaberrima13.8633.7294.87117forward
CNT30126375Triticum dicoccoidesCorymbia citriodora1641.2883.7135forward
CNT30681359Triticum dicoccoidesTriticum urartu61.0271.4399.81515forward

Expression of CNT30657523

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MGSVLTQPGLMMSAHRRPSAQPMRMSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPAAPSIAHRQCTSSACTFHRKLSGSDPTP

>peptide 2 (79 aa)
QCQHNNVQKGIHFLHRLQHQGTSTHPTSMHCSTITYHHPRSTSQERKKSSSTSDLLPRGSTLLGLVANSHRVPYLGAKA*

>peptide 3 (38 aa)
MCSIRVPGRWWRGRGRRGERRGCRWGRCRCTRPGTTRP*

>peptide 4 (41 aa)
MGPVPVYSAWNHAPMTASMARRPFLISLVRSSLSFSGEPVP*

>peptide 5 (65 aa)
DNANIIMFKRVFIFYIGYNTRVQVHIQQACIAPQLHTIIHGLLPRKEKNQVPPAIFFPVVAHSSD*

Sequence

>CNT30657523
GACAATGCCAACATAATAATGTTCAAAAGGGTATTCATTTTTTACATCGGCTACAACACCAGGGTACAAGTACACATCCAACAAGCATGCATTGCTCCAC
AATTACATACCATCATCCACGGTCTACTTCCCAGGAAAGAAAAAAATCAAGTTCCACCAGCGATCTTCTTCCCCGTGGTAGCACACTCCTCGGATTAGTT
GCTAACTCCCACCGTGTTCCTTACTTGGGGGCAAAGGCCTAAAACGTAACACCAAAAAGGGTCATACATCAGTACCCAAAAAATCATACATACACACATA
TATAGTACCAATATAATGTGTAGCATACGCGTACCCGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGGTGAGCGAAGAGGTTGTCGATGGGGCCGGTGCC
GGTGTACTCGGCCTGGAACCACGCGCCCATGACGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGAGCTTCTCGGGCGAG
CCGGTGCCGTAGCCGAGCGGGTCAAACCACAGACCACCGGGGTACCTTAGCTTGTTGTTGGGGAAGATGGGGTCGGTGTTGACGCAGCCGGGCTTGATGA
TGTCTGCCCACCGGCGGCCCTCGGCCCAGCCGATGAGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTA
CCACGACGGTGTGTTGAGGATGCCGATCTTGGTCAGCAGCTCCGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGGCAGTGCACCAGCTCCGCC
TGCACGTTCCACCGCAAGCTCTCCGGGTCGGATCCTACACCGCA