Detailed information on CNT30354623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616384Lactuca sativaSesamum indicum80.1976.2678.99514forward
CNT30269270Lactuca sativaChenopodium quinoa53.3565.1480.41342forward
CNT3091613Lactuca sativaSolanum tuberosum45.2438.3679.66290forward
CNT30559890Lactuca sativaActinidia chinensis41.0338.5182.89263forward
CNT30235097Lactuca sativaBrassica oleracea62.5650.0679.8401forward
CNT30508904Lactuca sativaSolanum lycopersicum45.2446.9380.34290forward
CNT30554721Lactuca sativaOryza glaberrima47.1132.380.13302forward
CNT30141877Lactuca sativaLolium perenne29.842.6384.29191forward
CNT30625502Lactuca sativaDaucus carota58.1945.8282.31373forward
CNT30350937Lactuca sativaEragrostis tef46.6554.0782.27299forward
CNT30366857Lactuca sativaSorghum bicolor48.9931.9881.85314forward
CNT30154934Lactuca sativaPrunus persica41.3457.3683.02265forward
CNT30408809Lactuca sativaPapaver somniferum51.9538.5481.08333forward
CNT30497833Lactuca sativaDigitaria exilis48.9935.682.48314forward
CNT30551544Lactuca sativaOryza brachyantha44.7741.2982.93287forward

Expression of CNT30354623

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVMLGCRKERSGCKRVRLGCRMVMSGCRKERSGCKPERSGCKLAM*

>peptide 2 (32 aa)
MMGCTRGTTGYSPVMKLAKNPSHQHKAKTVHR*

Sequence

>CNT30354623
CTGTAGTTGGGGGATGTAGGGCTGTATGGACTACTAGGAGAATAAGCCAACGAGGGGCTGTACTTAGCGGATGAAGGGTTGTAACTTGGTGAGGTGGGAC
TGTAACTTGGAGAAGTAGGACTGTAGCTTGGGGAAGTAGGACTGTACCCAGGTGAAGTTGGGCTGTAAGCAGGGGAGGTTGGGCTGTAGGAAGGGGAGGT
CGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGAGAGGTCGGGCTGTAAGAGGGTGAGGTTGGGCTGTAGGATGGTGATGTCGGGCTGTAGGAAGGA
GAGGTCGGGCTGTAAGCCGGAGAGGTCGGGCTGTAAGCTGGCGATGTAGGGCTGTAGCTAGGTGATGTGGGTGAGTAGCTTGGTGAGGTAGGGGAGTAGC
TAGGTGAAGTGGGTGAGTAGGTAGGACTTGTTGGGCTATAACCGGGTGAACTTGGGCTGTAAGTTGGAGAGGTGGGGCTGTATCCCGGAGATGATGGGCT
GTACCCGGGGGACGACGGGCTATAGCCCGGTGATGAAGTTGGCGAAAAACCCATCCCACCAACATAAGGCGAAAACTGTGCATCGTTAATCGGAGACAGC
CGTAGATTTGGGCTCAACAGATAATTCGTGGGAGACATTGC