Detailed information on CNT30625502


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Daucus carotaSetaria viridis22.7365.8482.7185forward
CNT30403468Daucus carotaBeta vulgaris41.5243.6782.25338forward
CNT30506120Daucus carotaNicotiana attenuata24.5734.1984.5200forward
CNT30592011Daucus carotaMusa acuminata27.455.0682.51223forward
CNT30508904Daucus carotaSolanum lycopersicum30.2239.8182.52246forward
CNT30256655Daucus carotaAvena sativa24.5744.5480.5200forward
CNT3067979Daucus carotaLeersia perrieri17.5739.7282.52143forward
CNT30341749Daucus carotaEragrostis tef34.2862.780.65279forward
CNT30596736Daucus carotaOryza meridionalis34.1536.8279.86278forward
CNT30354623Daucus carotaLactuca sativa37.9648.2182.85309forward
CNT30642028Daucus carotaCannabis sativa37.7159.9680.46307forward
CNT3028162Daucus carotaTheobroma cacao18.6727.0984.87152forward
CNT3051546Daucus carotaAmborella trichopoda19.0432.1681.94155forward
CNT30577473Daucus carotaOryza barthii34.2851.1979.21279forward
CNT30335475Daucus carotaCynara cardunculus39.3124.6382.5320forward

Expression of CNT30625502

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MMEKLDCMKVRLGCMMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCKQVRWGCRQVRWGCSLGRWGCSWGR*

>peptide 2 (38 aa)
CNWGMSDCTGWMVIVLDCSGNMPGRGCTLQMKGCSLEM*

>peptide 3 (35 aa)
MLVSWGYNQVKRGYNLEKMQEKIPCHQHREKIVHQ*

>peptide 4 (37 aa)
MIWGARDWRPGWSHAKVQTVHVTRKLNVNSLFQHLLI*

Sequence

>CNT30625502
CTGTAACTGGGGGATGTCGGACTGTACGGGCTGGATGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATGAAGGGT
TGTAGCTTGGAGATGTAGGACTATAGCTTGGAGATGTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGGAGAAGT
TGGACTGTATGAAGGTGAGGTTGGGCTGTATGATGGGGAGGTTGGGCTGTAGGACGGGGAGCTCGGGCTGTAGGACGGAGAGGTCGGGCTGTAGGATGGA
GAGGTGGGGCTGTAGGACGGAGAGGTGGGGCTGTAAGCAGGTGAGGTGGGGCTGTAGGCAGGTGAGGTGGGGCTGTAGCTTGGGGAGGTGGGGCTGTAGC
TGGGGGAGGTAGGGGAGTAGGATGGACTTGTCGGTGAATATGTAGGGCTACTAGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCTGGGGCT
ATAACCAGGTGAAGAGGGGCTATAACTTGGAGAAGATGCAGGAGAAAATCCCATGCCACCAACATAGGGAGAAAATTGTGCATCAGTAATGGGTGACAGC
CGAAGGTTTGGGCTTAGCATGTAGTTTGGTGACATCATTCCATCATGATATGGGGTGCCCGAGATTGGCGACCGGGCTGGAGTCATGCCAAAGTCCAGAC
CGTCCATGTAACTAGGAAGCTGAATGTCAATAGCTTGTTTCAACATCTTCTCATTTAAATACAAAGAACAGTCTCCAGTGCCAATTGGTGCCAGTTGACC
CAACATGATATTTT