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Detailed information on CNT30574166


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Vitis viniferaSetaria italica90.6868.8579.43389forward
CNT30700558Vitis viniferaQuercus lobata61.3197.4183.65263forward
CNT30304911Vitis viniferaTriticum aestivum56.6440.6480.66243forward
CNT30141877Vitis viniferaLolium perenne60.6158.0480.77260forward
CNT3067979Vitis viniferaLeersia perrieri69.783.0679.6299forward
CNT30205370Vitis viniferaHelianthus annuus72.4947.6381.99311forward
CNT30687113Vitis viniferaTriticum urartu92.7774.8179.15398forward
CNT30341751Vitis viniferaEragrostis tef82.9873.5579.21356forward
CNT30335477Vitis viniferaCynara cardunculus66.274.7483.45284forward
CNT3049674Vitis viniferaCucumis sativus55.9488.8983.75240forward

Expression of CNT30574166

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SDCKGLMEIVLDCWENMPVMGCILLRKDYN*

>peptide 2 (71 aa)
MLDCNQERSGYMPERWGCMMERLDYKKVRLGYRMVRWGCKQEKWGCMQEKWGCMRVMLGCRQEKLDCNLEK*

Sequence

>CNT30574166
GTCGGACTGTAAGGGCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGATTATAACTAGGTGATG
TAGGGCTGTAGCTTGGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTCGGGCTATATGCCGGAGAGGTGGGGCTGTATGATGG
AGAGGTTGGACTATAAGAAGGTGAGGTTGGGCTATAGGATGGTGAGGTGGGGCTGTAAGCAGGAGAAGTGGGGCTGTATGCAGGAGAAGTGGGGCTGTAT
GAGGGTGATGTTGGGCTGTAGACAGGAGAAGTTGGACTGTAACTTGGAGAAGTAGGACTGTAGCTTGGAGATGTAGGACTGTAACTGGGAGATGTGGGGC
TGTAGCTGGGGGATGTGGGGCTGTAGCTG