Detailed information on CNT3049674


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 6e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403407Cucumis sativusBeta vulgaris88.5259.1681.59239forward
CNT30506120Cucumis sativusNicotiana attenuata82.9638.2982.59224forward
CNT30234505Cucumis sativusBrassica oleracea45.196184.43122forward
CNT30574166Cucumis sativusVitis vinifera88.8955.9483.75240forward
CNT30335477Cucumis sativusCynara cardunculus92.9666.0581.67251forward

Expression of CNT3049674

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLERWGCTKVMWDCKTVMLGCRRVKWGCKQAKWGCNLGKWGCNLVMWGCN*

Sequence

>CNT3049674
GCTGATTGAGGATTATAACTAGGTGAGGTTGGACTATAGCTAGGAGAAGTGGGGCTATAGCTCGGTGACGTGGGACTATAGCCAGGGGAGGTGGGGCTAT
ATGCTGGAGAGGTGGGGCTGTACGAAGGTGATGTGGGACTGTAAGACGGTGATGTTGGGCTGTAGGAGGGTGAAGTGGGGCTGTAAGCAGGCGAAGTGGG
GCTGTAACTTGGGGAAGTGGGGCTGTAACTTGGTGATGTGGGGCTGTAACTAGGAGAGGTGGGGCTGTAA