CANTATAdb - search

Detailed information on CNT30355218

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30403782	Lactuca sativa	Beta vulgaris	29.46	47.85	81	200	forward
CNT30591824	Lactuca sativa	Musa acuminata	39.76	68.35	81.48	270	forward
CNT30312316	Lactuca sativa	Camelina sativa	21.65	39.3	85.03	147	forward
CNT30216752	Lactuca sativa	Kalanchoe fedtschenkoi	37.41	54.86	82.68	254	forward
CNT30109704	Lactuca sativa	Oryza longistaminata	37.85	46.22	81.32	257	forward
CNT30335477	Lactuca sativa	Cynara cardunculus	48.75	87.11	84.89	331	forward

Expression of CNT30355218

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMGCTRGTTGYSPVMKLAKNPSHQHKAKTVHR*

Sequence

>CNT30355218
CTGTAGTTGGGGGATGTAGGGCTGTATGGACTACTAGGAGAATAAGCCAACGAGGGGCTGTACTTAGCGGATGAAGGGTTGTAACTTGGTGAGGTGGGAC
TGTAACTTGGAGAAGTAGGACTGTAGCTTGGGGAAGTAGGACTGTACCCAGGTGAAGTTGGGCTGTAAGCAGGGGAGGTTGGGCTGTAGGAAGGGGAGGT
CGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGAGAGGTCGGGCTGTAAGCCGGAGAGGTCGGGCTGTAAGCTGGCGATGTAGGGCTGTAGCTAGGT
GATGTGGGTGAGTAGCTTGGTGAGGTAGGGGAGTAGCTAGGTGAAGTGGGTGAGTAGGTAGGACTTGTTGGGCTATAACCAGGCGAGGTGGGGCTGTATC
CCGGAGATGATGGGCTGTACCCGGGGGACGACGGGCTATAGCCCGGTGATGAAGTTGGCGAAAAACCCATCCCACCAACATAAGGCGAAAACTGTGCATC
GTTAATCGGAGACAGCCGTAGATTTGGGCTCAACAGATAATTCGTGGGAGACATTGCACCATCGTGGAAAGGAGTAATGGGGGACCGCCCAGGTGTCATC
CCGATATCCAGCCCGTCCATGTAACTCGGAAGCTGAACATCAATCGCTTGCTGTAACATCTCTTCGTTCAACAACAAAG